PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g04080.3

Common Name

LR48_Vigan02g275000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Protein Properties

Length: 144aa MW: 16410.7 Da PI: 7.9404

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g04080.3	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	80.4	1.8e-25	1	90	5	82
-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 ltpsdv+k++rlv+pkk+a ++ +++ ++++ ++d+ r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F Vang06g04080.3 1 LTPSDVGKLNRLVIPKKHAVTYfpnvcdggaeshEENVSADVEVAFYDRLMRQWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAF 90 68************************99887744555889*******************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	6.8E-14	1	101	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.18	1	116	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.3E-28	1	92	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.72E-20	1	90	No hit	No description
SuperFamily	SSF101936	4.58E-24	1	93	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-22	1	90	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
LTPSDVGKLN RLVIPKKHAV TYFPNVCDGG AESHEENVSA DVEVAFYDRL MRQWKFRYCY 60 WKSSQSYVFT RGWNRFVKDK KLKAKDTIAF FTCEPVDCRK GGEGEAFGLI DVIYSSDEDT 120 KDEHTLKDLN AEKGLKLFGV LIK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-26	1	93	12	96	B3 domain-containing transcription factor NGA1
5os9_B	2e-26	1	93	12	96	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g04080.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413266.1	1e-102	PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
Swissprot	Q9C688	3e-43	RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBL	A0A0L9U1E2	1e-101	A0A0L9U1E2_PHAAN; Uncharacterized protein
STRING	XP_007142618.1	2e-74	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-45	RAV family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]