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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vang06g04080.3 |
Common Name | LR48_Vigan02g275000 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
B3 |
Protein Properties |
Length: 144aa MW: 16410.7 Da PI: 7.9404 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vang06g04080.3 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 80.4 | 1.8e-25 | 1 | 90 | 5 | 82 |
-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
B3 5 ltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
ltpsdv+k++rlv+pkk+a ++ +++ ++++ ++d+ r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F
Vang06g04080.3 1 LTPSDVGKLNRLVIPKKHAVTYfpnvcdggaeshEENVSADVEVAFYDRLMRQWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAF 90
68**************************99887744555889*********************************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 144 aa
Download sequence Send
to blast |
LTPSDVGKLN RLVIPKKHAV TYFPNVCDGG AESHEENVSA DVEVAFYDRL MRQWKFRYCY 60 WKSSQSYVFT RGWNRFVKDK KLKAKDTIAF FTCEPVDCRK GGEGEAFGLI DVIYSSDEDT 120 KDEHTLKDLN AEKGLKLFGV LIK*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 2e-26 | 1 | 93 | 12 | 96 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-26 | 1 | 93 | 12 | 96 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |