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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g04080.1 | ||||||||
Common Name | LR48_Vigan02g275000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | RAV | ||||||||
Protein Properties | Length: 281aa MW: 32078.2 Da PI: 8.1196 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.6 | 1.7e-09 | 14 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV ++g W A+I+ + +r++lg+f ++ eAa a++ a kl++ Vang06g04080.1 14 KFKGVV-PQQNGNWGAQIYA------NhQRIWLGTFKSEREAAMAYDSASIKLRN 61 789996.666999****999......44**********99**********99997 PP | |||||||
2 | B3 | 84.3 | 1.1e-26 | 134 | 227 | 1 | 82 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsdv+k++rlv+pkk+a ++ +++ ++++ ++d+ r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F Vang06g04080.1 134 FQKELTPSDVGKLNRLVIPKKHAVTYfpnvcdggaeshEENVSADVEVAFYDRLMRQWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAF 227 99******************************99887744555889*********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.90E-21 | 13 | 71 | No hit | No description |
SMART | SM00380 | 1.0E-17 | 14 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.766 | 14 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-15 | 14 | 71 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-5 | 14 | 61 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-16 | 14 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-30 | 131 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-25 | 132 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.85E-23 | 133 | 227 | No hit | No description |
SMART | SM01019 | 4.1E-19 | 134 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-24 | 134 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.293 | 134 | 253 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MQEENNAAGP LLQKFKGVVP QQNGNWGAQI YANHQRIWLG TFKSEREAAM AYDSASIKLR 60 NGDSHRNFPW NDQTVQEPQF QSHYSTETML SMIRDGTYPS RFATFLSTRQ QGGVLKHVTL 120 KDDGKEQLCC TQLFQKELTP SDVGKLNRLV IPKKHAVTYF PNVCDGGAES HEENVSADVE 180 VAFYDRLMRQ WKFRYCYWKS SQSYVFTRGW NRFVKDKKLK AKDTIAFFTC EPVDCRKGGE 240 GEAFGLIDVI YSSDEDTKDE HTLKDLNAEK GLKLFGVLIK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-26 | 132 | 230 | 6 | 96 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-26 | 132 | 230 | 6 | 96 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g04080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413266.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C688 | 4e-99 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A0L9U1E2 | 0.0 | A0A0L9U1E2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142618.1 | 1e-168 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5000 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-101 | RAV family protein |
Publications ? help Back to Top | |||
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