PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 489aa MW: 54041.5 Da PI: 6.3601

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g04030.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.5	2.8e-08	184	241	4	62
XCHHHCHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkae...ieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 k rr+++NReAAr+sR+RKk + + L+ v++Le+ + +l +l++e ++ +++ Vang06g04030.2 184 QKTLRRLAQNREAARKSRLRKKTSyrnVVTLQAYVQQLESSRL----KLTQLEQELQRARQQ 241 6888****************86222677********994....377888887776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-7	175	242	No hit	No description
SMART	SM00338	0.0022	181	244	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	188	203	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.5E-32	285	360	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MSLPVIPHGQ KHSCVCVEDE KGTARGMPSF NPQLPNSNAC YTEGSTVDSF RLSDFDQSVG 60 YRIEDAVALS GNSILDSLKV SSQTISRGVI QLGSFDKLPT SLDKSILTNQ TEQQSLQFQK 120 VHTSNLVTGD TEHQEEFAMA DASPRTDIST DADTDDKNPQ FDRNQALAAV ASDSSDRSKD 180 KTDQKTLRRL AQNREAARKS RLRKKTSYRN VVTLQAYVQQ LESSRLKLTQ LEQELQRARQ 240 QVGCNYSLEG VFISSSGDQA HSMSGNGAMA FDAEYARWLE EQNRQINELR SAVNSHAGDT 300 ELCMIIDGVM AHYDEIFRLK ANAAKADVFH LLSGMWKTPA ERCFLWLGGF RSSELLKLLV 360 NQLEPLTEQQ LVGITNLQQS SQQAEDALSQ GMEALQQSLS ETLSTGSLGS SGSSGNVANY 420 MGQMAMAMGK LGTLEGFIKQ ADNLRQQTLQ QIHRILTTRQ SARALLAIHD YFSRLRALSS 480 LWLARPRD*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MSLPVIPHGQ KHSCVCVEDE KGTARGMPSF NPQLPNSNAC YTEGSTVDSF RLSDFDQSVG  60
YRIEDAVALS GNSILDSLKV SSQTISRGVI QLGSFDKLPT SLDKSILTNQ TEQQSLQFQK  120
VHTSNLVTGD TEHQEEFAMA DASPRTDIST DADTDDKNPQ FDRNQALAAV ASDSSDRSKD  180
KTDQKTLRRL AQNREAARKS RLRKKTSYRN VVTLQAYVQQ LESSRLKLTQ LEQELQRARQ  240
QVGCNYSLEG VFISSSGDQA HSMSGNGAMA FDAEYARWLE EQNRQINELR SAVNSHAGDT  300
ELCMIIDGVM AHYDEIFRLK ANAAKADVFH LLSGMWKTPA ERCFLWLGGF RSSELLKLLV  360
NQLEPLTEQQ LVGITNLQQS SQQAEDALSQ GMEALQQSLS ETLSTGSLGS SGSSGNVANY  420
MGQMAMAMGK LGTLEGFIKQ ADNLRQQTLQ QIHRILTTRQ SARALLAIHD YFSRLRALSS  480
LWLARPRD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g04030.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093315	0.0	BT093315.1 Soybean clone JCVI-FLGm-24E7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414991.1	0.0	PREDICTED: transcription factor TGA6-like
Refseq	XP_017414992.1	0.0	PREDICTED: transcription factor TGA6-like
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A0S3SKZ3	0.0	A0A0S3SKZ3_PHAAN; Uncharacterized protein
STRING	XP_007142625.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1470	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-145	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]