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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g02190.1 | ||||||||
Common Name | LR48_Vigan02g238000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 808aa MW: 92706.9 Da PI: 7.3237 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.1 | 5.3e-27 | 49 | 135 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e ++ ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnHel p Vang06g02190.1 49 FYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPEFDSG---SSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLP 135 9***************************************998877...7788889*******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-24 | 49 | 135 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.8E-28 | 255 | 347 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.347 | 534 | 570 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.9E-6 | 544 | 569 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.4E-8 | 545 | 572 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence Send to blast |
MGDALNEVQH RGGVPASSPK RDIALFEGDK DFEPHNGIEF ESHEAAYLFY QEYAKSMGFT 60 TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE FDSGSSRRPS VKKTDCKACM HVKRKPDGKW 120 IIHEFIKEHN HELLPALAYH FRIHRNVKLA EKNNIDILNA VSERTRKMYV EMSRQSGGCQ 180 NIGSFVSDIN YQFDRGQYLA LEEGDAQIML EYFKHVQKES PNFFYSIDLS EEQRLRNLFW 240 IDAKSINDYL SFNDVVSFDT TYIKSNDKLP FAPFVGVNHH SQPILLGCAL VADESKPTFV 300 WLMKTWLRAM GGQAPKVIIT DQDKALKAAI EEVFPNVRHC FSLCHILERI PENLSFVIKQ 360 HNNFLQKFNK CIFKSTEDQF DMRWWKMVSI YELQDDVWFQ SLYEDRKKWV PTYMGDTFLA 420 GMSTPQRSES TSSFFDKYIH KKITLKEFVK QYGIILQNRY DEEAIADFES LHKQPALKSP 480 SPWEKQMSTI YTHAIFKKFQ VEVLGVAGCQ SRIDVGDGTL AKFIVQDYEK DEEFLVTWNE 540 MSSEVSCFCR LFEYKGFLCR HALSVLQRCG CSSVPSHYIL KRWTKDAKIK ESVADRTRRI 600 QTRVQRYNDL CKRAIDLSEE GSLSEENYNV VFRALVDALK NCVLVNNCNN NGAETSNNAY 660 GIRETEENQG PLALKPNKKR NAARKRKAQL EQDVILVNAQ DSLQQMDNLS SDAMTLNGYY 720 GTQQNVQGLV QLNLMEPPHD GYYVNQQGMQ GLGPLNSMAP SHDGFFGTQQ GIHGLGGQLE 780 FRPSTTFGYS LQDEPDPQFH GNSSRNT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g02190.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017415401.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X2 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A1S3V9I7 | 0.0 | A0A1S3V9I7_VIGRR; protein FAR-RED IMPAIRED RESPONSE 1 isoform X2 | ||||
STRING | XP_007143097.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |