PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g02190.1
Common NameLR48_Vigan02g238000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 808aa    MW: 92706.9 Da    PI: 7.3237
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g02190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.15.3e-2749135291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e ++    ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnHel p
  Vang06g02190.1  49 FYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPEFDSG---SSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLP 135
                     9***************************************998877...7788889*******************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-2449135IPR004330FAR1 DNA binding domain
PfamPF105511.8E-28255347IPR018289MULE transposase domain
PROSITE profilePS509669.347534570IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-6544569IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-8545572IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MGDALNEVQH RGGVPASSPK RDIALFEGDK DFEPHNGIEF ESHEAAYLFY QEYAKSMGFT  60
TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE FDSGSSRRPS VKKTDCKACM HVKRKPDGKW  120
IIHEFIKEHN HELLPALAYH FRIHRNVKLA EKNNIDILNA VSERTRKMYV EMSRQSGGCQ  180
NIGSFVSDIN YQFDRGQYLA LEEGDAQIML EYFKHVQKES PNFFYSIDLS EEQRLRNLFW  240
IDAKSINDYL SFNDVVSFDT TYIKSNDKLP FAPFVGVNHH SQPILLGCAL VADESKPTFV  300
WLMKTWLRAM GGQAPKVIIT DQDKALKAAI EEVFPNVRHC FSLCHILERI PENLSFVIKQ  360
HNNFLQKFNK CIFKSTEDQF DMRWWKMVSI YELQDDVWFQ SLYEDRKKWV PTYMGDTFLA  420
GMSTPQRSES TSSFFDKYIH KKITLKEFVK QYGIILQNRY DEEAIADFES LHKQPALKSP  480
SPWEKQMSTI YTHAIFKKFQ VEVLGVAGCQ SRIDVGDGTL AKFIVQDYEK DEEFLVTWNE  540
MSSEVSCFCR LFEYKGFLCR HALSVLQRCG CSSVPSHYIL KRWTKDAKIK ESVADRTRRI  600
QTRVQRYNDL CKRAIDLSEE GSLSEENYNV VFRALVDALK NCVLVNNCNN NGAETSNNAY  660
GIRETEENQG PLALKPNKKR NAARKRKAQL EQDVILVNAQ DSLQQMDNLS SDAMTLNGYY  720
GTQQNVQGLV QLNLMEPPHD GYYVNQQGMQ GLGPLNSMAP SHDGFFGTQQ GIHGLGGQLE  780
FRPSTTFGYS LQDEPDPQFH GNSSRNT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00434DAPTransfer from AT4G15090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g02190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415401.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
SwissprotQ9SWG30.0FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A1S3V9I70.0A0A1S3V9I7_VIGRR; protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
STRINGXP_007143097.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein
Publications ? help Back to Top
  1. Domergue F, et al.
    Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.
    Plant Physiol., 2010. 153(4): p. 1539-54
    [PMID:20571114]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  4. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  5. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  6. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  7. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  8. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  9. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  10. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  11. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]