PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g00960.1 | ||||||||
Common Name | LR48_Vigan02g246400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34662 Da PI: 6.8762 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.1e-18 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++++G g+W+ a+ g++Rt+k+c++rw++yl Vang06g00960.1 20 RGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYL 67 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Vang06g00960.1 73 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.417 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-31 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-12 | 22 | 67 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 35 | 44 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 25.751 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 73 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.10E-12 | 77 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MSTIAKRDLS SNEEDSELRR GPWTLEEDSL LIHYIARHGE GRWNMLAKSA GLKRTGKSCR 60 LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK 120 QARQLNIESG SKRFIDAVKC FWMPRLLQKM EQNNSPSPHC SMTSMVNLGN SGEASMSSTS 180 SSFNIPSVFS SSPPQREFIM DGANHLGTMS NPINPSPDSF PFSQLLGISE HPKSPPNVLE 240 NNVYSYPIQD NCYADTNNYG MEGLNMDPLS AMGTYDFPQF DFQSAGNGWM LDSVEDTTLW 300 NMDAM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-26 | 17 | 122 | 4 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g00960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414164.1 | 0.0 | PREDICTED: myb-related protein 340-like | ||||
TrEMBL | A0A0L9U1L7 | 0.0 | A0A0L9U1L7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SLR4 | 0.0 | A0A0S3SLR4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142925.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 1e-86 | myb domain protein 62 |
Publications ? help Back to Top | |||
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