PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g00480.1 | ||||||||
Common Name | LR48_Vigan02g251700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 291aa MW: 33439.6 Da PI: 9.551 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.5 | 9.8e-13 | 12 | 86 | 17 | 97 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +p kf+++hg+ + ++l+ +++++W v+ ++ g+++l kGWkeFv+ L g fv+Fk++g+s+ v+++ Vang06g00480.1 12 KVPSKFTRKHGSF--LPNPVSLRPPDSKEWVVYW--TQENGEVWLDKGWKEFVENYSLSYGYFVMFKFKGTSQI--DVTIL 86 58********766..4556***************..999999*************************9987655..66665 PP | |||||||
2 | B3 | 35.8 | 1.4e-11 | 226 | 278 | 33 | 87 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k+++ + ++r+W vkli ++ + v+++GW++F+k+ +L++ D+++F+l++ Vang06g00480.1 226 QKDVM-LQMENREWWVKLICCREKYD-VFSSGWSKFAKESNLEVDDVCIFELIDP 278 23444.44477*******88777766.7999********************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.478 | 1 | 89 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-7 | 1 | 89 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.46E-17 | 9 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-18 | 11 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-9 | 12 | 80 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.96E-11 | 13 | 87 | No hit | No description |
SMART | SM01019 | 0.0019 | 167 | 289 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-12 | 193 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-12 | 193 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.32 | 199 | 290 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.54E-7 | 213 | 289 | No hit | No description |
Pfam | PF02362 | 4.2E-9 | 225 | 279 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
LFRILMLGSL QKVPSKFTRK HGSFLPNPVS LRPPDSKEWV VYWTQENGEV WLDKGWKEFV 60 ENYSLSYGYF VMFKFKGTSQ IDVTILDPSA VELDYFSSGK ESVNTMNVTQ MEQEPRPMSS 120 MVPSQPCGKT QNVERDANVQ QQVYADKGGP SHQGTNVQKI IKQQPNWVKS TLSGKCLNKP 180 RSLKAQKITK NFKSKYPYFT SLIVQAKLEE NATKHVPKFL NCMRGQKDVM LQMENREWWV 240 KLICCREKYD VFSSGWSKFA KESNLEVDDV CIFELIDPAI PMLRVHVVKS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g00480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413767.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0L9U102 | 0.0 | A0A0L9U102_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142861.1 | 4e-90 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-21 | B3 family protein |
Publications ? help Back to Top | |||
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