PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GATA

Protein Properties

Length: 339aa MW: 36730.9 Da PI: 5.6294

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0692s00050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.5	1.8e-18	244	277	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tkTp+WR gp g+ktLCnaCG++y++ + Vang0692s00050.1 244 CVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 277 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	1.7E-76	2	332	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	1.8E-17	238	288	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.82	238	274	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.2E-15	242	275	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	9.5E-15	242	301	No hit	No description
CDD	cd00202	5.59E-15	243	290	No hit	No description
Pfam	PF00320	4.7E-16	244	277	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	244	269	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MIGNFIDDID CGSFFDHIDD LLEFPAEETS AVTDTTVVTP VAPPPTNFWS TESDSLHATN 60 TVFSGNTVPD LSTELSVPFE DIEQLEWLSN FVEDSFSGGS LTMQQEQPQC TNKEDTTHAQ 120 FQTASPVSVL ESSTFYSGMK AASRNAEIYI PVPCGRARSK RPRPAAFNPY PVMQLISPAS 180 STGENTQPIT TTSKTSSDSE NFAESTIKPP KQASGEHKKK KKIKVTFSGG EDHNAAASQA 240 VRKCVHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF CAAVHSNSHK 300 KVLEMRNKTD PKSGFAADSA SAPELIPNTN SSLSLEYM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	163	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0692s00050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017437646.1	0.0	PREDICTED: GATA transcription factor 8-like
Refseq	XP_017437647.1	0.0	PREDICTED: GATA transcription factor 8-like
Refseq	XP_017437648.1	0.0	PREDICTED: GATA transcription factor 8-like
Refseq	XP_017437649.1	0.0	PREDICTED: GATA transcription factor 8-like
TrEMBL	A0A0L9VL46	0.0	A0A0L9VL46_PHAAN; GATA transcription factor
TrEMBL	A0A0S3TA78	0.0	A0A0S3TA78_PHAAN; GATA transcription factor
STRING	XP_007151876.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4887	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	9e-46	GATA transcription factor 9

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]