PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0690s00020.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 408aa MW: 46075.8 Da PI: 7.8595 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.6e-08 | 34 | 53 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C f+++ G C yG+rC++ H Vang0690s00020.2 34 ICTFYQK-GVCAYGSRCRYDH 53 7******.************* PP | |||||||
2 | zf-CCCH | 18.8 | 2.9e-06 | 146 | 166 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ fa+ G C++G++C+ +Hg Vang0690s00020.2 146 ICS-FAAAGNCPRGEQCPHIHG 166 677.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.615 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.38 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0024 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-6 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.465 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0037 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.83E-13 | 202 | 274 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 3.9E-10 | 203 | 269 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00207 | 209 | 269 | No hit | No description |
SMART | SM00184 | 7.1E-7 | 210 | 267 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 3.5E-7 | 210 | 267 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.386 | 210 | 268 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 234 | 243 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 9.911 | 297 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MSKRVLCKFF AHGACLKGEH CEYSHDWKDP PNNICTFYQK GVCAYGSRCR YDHIKASQAQ 60 SSIPSSSAIE HHTLVSDTGA FGNIITTSNG VGTAADLSLS SSPYILPSEP AWNHELVWNP 120 EIEYYEILGE DNVGQSIITS PSELSICSFA AAGNCPRGEQ CPHIHGDLCP TCGKHCLHPF 180 RPEEREEHMK TCESRHKYLD ALKRSQEIEC SVCLERVLSK PILAERKFGL LSECDHPFCI 240 SCIRNWRSSN PTLGMDVNST LRACPICRKL SYFVIPSVVW YSTTEEKQEI IDKYKEKLKS 300 IDCKHFDFGD GNCPFGSSCF YKIVVWGLNC VKTCISRWPC GAGSIATSRC CRWKYRNCKR 360 YQVVGFPFQH AFKMNGVSFK LVFPLLKLRV TFVYDLMYNN ISFVFDA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0690s00020.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017425409.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69 | ||||
Swissprot | E0X9N4 | 1e-146 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A0S3SIW0 | 0.0 | A0A0S3SIW0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148855.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10211 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-137 | C3H family protein |
Publications ? help Back to Top | |||
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