PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 1072aa MW: 119192 Da PI: 9.2584

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0684s00050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.3	4.8e-19	979	1059	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +ev++Li +r+e+++r++ k +++lWee+s+k+ + g++rsp qCk+ w +l +y+ ik+ + ++ +++py +++e Vang0684s00050.1 979 KWRTDEVKKLIGMREELHDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSK-----KSWPYIEDME 1059 7**************************************************************999984.....56*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.60.15.10	4.7E-60	73	249	IPR001279	Metallo-beta-lactamase
SuperFamily	SSF56281	4.17E-64	74	246	IPR001279	Metallo-beta-lactamase
SMART	SM00849	3.9E-20	86	289	IPR001279	Metallo-beta-lactamase
Pfam	PF00753	3.6E-9	87	231	IPR001279	Metallo-beta-lactamase
SuperFamily	SSF56281	4.17E-64	301	522	IPR001279	Metallo-beta-lactamase
Gene3D	G3DSA:3.60.15.10	4.7E-60	301	369	IPR001279	Metallo-beta-lactamase
Pfam	PF07521	1.2E-6	475	506	IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profile	PS50090	8.235	972	1036	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.1E-4	973	1036	IPR009057	Homeodomain-like
Pfam	PF13837	1.7E-15	977	1061	No hit	No description
CDD	cd12203	5.61E-18	978	1043	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence Send to blast
MAALTSLSLS LRPLSLRRTT TSATLSSLPG RTHGSTTKAP RRRARRIEGP RKSMEDSVQR 60 KMEQFYEGSD GPPLRVLPIG GLGEIGMNCM LVGNHDRYIL IDAGVMFPDY DELGVQKIIP 120 DTTFIRKWSH KIEALVITHG HEDHIGALPW VIPALDSNTP IFSSSFTKEL INKRLKEHGI 180 FVPSRLKVFR MRKKFVAGPF EIEPIRVTHS IPDCCGLVLR CSDGTILHTG DWKIDETPLD 240 GNVFDREALE ELSKEGVTLV YTYNYGLWCS LSSALYIKLN MAFMASPGLK GEHVSTFKIS 300 NCIPLMMSDS TNVLSPGRTI SESVVADALL RHISTSNGRV ITTQFASNLH RLGSVKAAAD 360 LTGRKLVFVG MSLRTYLDAA WKDGKAPIDP STLVKAEDID AYAPKDLLIV TTGSQAEPRA 420 ALNLASYGSS HAFKLTKEDL VLYSAKVIPG NESRVMKMLN RISDIGSTIV MGKNEGLHTS 480 GHAYRGELEE VLRIVKPQHF LPIHGELLFL KEHELLGKST GIRHTAVSHL LLTKVILSIS 540 QKWTSVLLVD EQLITLALWT QVRSVDARPA KRTPSLDARP AKRTPNQAEE DARPTKRTPS 600 QAEEDARXAK RTPSQXEEDA RPAKRTPSQX EEDARPAKRT PSQXEEDARP AKRTPTSWPK 660 LEDKAKCRVK GECLRKLVEM TAKLTEEKLS KERNTHGMDG PLSLSTKFDE NFDPLLKYSD 720 GDRAFGTSSE LFIDERLRIA LDGIIVTSME IFRPKILGSL APNTLKGKIR ITTRCLWLDK 780 GKLMDALYKS AHAALSSCPV NSPLAHIERT VSEVLRKMVR KYSGKRPEVI AIAIENPAST 840 ITDEINTKLS GKTHAGLGIS TAKRAVDRHE KGNQPTSLQI TDDSIHNASG PEDYLSDEDN 900 TASGAEGDLS ELEDSDEFWK PFIAPLPVEK PLGANNAYDS QKEHESNRKK DDSKIIDKAK 960 SEEISTSEPK SSKSVKRNKW RTDEVKKLIG MREELHDRFQ VVKGRMALWE EISQKLLADG 1020 ISRSPGQCKS LWTSLVLKYE GIKNEKDSKK SWPYIEDMER IMSDKEAPAT K*

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence Send to blast

MAALTSLSLS LRPLSLRRTT TSATLSSLPG RTHGSTTKAP RRRARRIEGP RKSMEDSVQR  60
KMEQFYEGSD GPPLRVLPIG GLGEIGMNCM LVGNHDRYIL IDAGVMFPDY DELGVQKIIP  120
DTTFIRKWSH KIEALVITHG HEDHIGALPW VIPALDSNTP IFSSSFTKEL INKRLKEHGI  180
FVPSRLKVFR MRKKFVAGPF EIEPIRVTHS IPDCCGLVLR CSDGTILHTG DWKIDETPLD  240
GNVFDREALE ELSKEGVTLV YTYNYGLWCS LSSALYIKLN MAFMASPGLK GEHVSTFKIS  300
NCIPLMMSDS TNVLSPGRTI SESVVADALL RHISTSNGRV ITTQFASNLH RLGSVKAAAD  360
LTGRKLVFVG MSLRTYLDAA WKDGKAPIDP STLVKAEDID AYAPKDLLIV TTGSQAEPRA  420
ALNLASYGSS HAFKLTKEDL VLYSAKVIPG NESRVMKMLN RISDIGSTIV MGKNEGLHTS  480
GHAYRGELEE VLRIVKPQHF LPIHGELLFL KEHELLGKST GIRHTAVSHL LLTKVILSIS  540
QKWTSVLLVD EQLITLALWT QVRSVDARPA KRTPSLDARP AKRTPNQAEE DARPTKRTPS  600
QAEEDARXAK RTPSQXEEDA RPAKRTPSQX EEDARPAKRT PSQXEEDARP AKRTPTSWPK  660
LEDKAKCRVK GECLRKLVEM TAKLTEEKLS KERNTHGMDG PLSLSTKFDE NFDPLLKYSD  720
GDRAFGTSSE LFIDERLRIA LDGIIVTSME IFRPKILGSL APNTLKGKIR ITTRCLWLDK  780
GKLMDALYKS AHAALSSCPV NSPLAHIERT VSEVLRKMVR KYSGKRPEVI AIAIENPAST  840
ITDEINTKLS GKTHAGLGIS TAKRAVDRHE KGNQPTSLQI TDDSIHNASG PEDYLSDEDN  900
TASGAEGDLS ELEDSDEFWK PFIAPLPVEK PLGANNAYDS QKEHESNRKK DDSKIIDKAK  960
SEEISTSEPK SSKSVKRNKW RTDEVKKLIG MREELHDRFQ VVKGRMALWE EISQKLLADG  1020
ISRSPGQCKS LWTSLVLKYE GIKNEKDSKK SWPYIEDMER IMSDKEAPAT K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5a0t_A	2e-74	74	524	19	419	RIBONUCLEASE J
5a0t_B	2e-74	74	524	19	419	RIBONUCLEASE J
5a0v_A	2e-74	74	524	19	419	RIBONUCLEASE J
5a0v_B	2e-74	74	524	19	419	RIBONUCLEASE J
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250\|UniProtKB:Q72JJ7, ECO:0000269\|PubMed:15266054, ECO:0000269\|PubMed:22033332, ECO:0000269\|PubMed:25871650}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0684s00050.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:25871650}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017411370.1	0.0	PREDICTED: ribonuclease J-like isoform X1
Swissprot	Q84W56	0.0	RNJ_ARATH; Ribonuclease J
TrEMBL	A0A1S3T8E2	0.0	A0A1S3T8E2_VIGRR; uncharacterized protein LOC106752779 isoform X1
STRING	XP_007137930.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5099	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein

Publications ? help Back to Top
Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Halpert M,Liveanu V,Glaser F,Schuster G The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Plant Mol. Biol., 2019. 99(1-2): p. 17-29 [PMID:30511330]