PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0632s00010.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 272aa MW: 29450.1 Da PI: 9.8698

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0632s00010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.5e-39	48	107	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+++kcprCds+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+s Vang0632s00010.1 48 QEAQQKCPRCDSSNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRS 107 67899*****************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-22	47	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	50	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.441	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
LFDVIILSTC IASQKIKPST FTKEKAPRGT MVYTSIPAYI DPANWQQQEA QQKCPRCDSS 60 NTKFCYFNNY SLSQPRHFCK ACRRYWTRGG ALRNVPVGGG CRRNKRSRGS SGSSARSPAN 120 SDRQTASAGS ASTTRDLNFH IGNALNGGGG SVLSGLDQWR MPQTHQFPFL SGLEASSSHG 180 LYSFDGASGS DGYGGTPIKV STSGVMSQFA SVKMEDNHQE LVISVRQQEL LKSTHKKICD 240 IKAKQELEIR GGRGELELEI CSKGQVGVGK P*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0632s00010.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-145	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007140287.1	8e-88	hypothetical protein PHAVU_008G099400g
Swissprot	O80928	1e-36	DOF24_ARATH; Dof zinc finger protein DOF2.4
TrEMBL	V7B733	2e-86	V7B733_PHAVU; Uncharacterized protein
STRING	XP_007140287.1	3e-87	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	3e-30	Dof family protein

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]