PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0605s00070.1 | ||||||||
Common Name | LR48_Vigan04g106000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 87aa MW: 9989.06 Da PI: 9.7571 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.1 | 4.1e-29 | 1 | 59 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++ +pr+YY+C+ agC+vkk+ver+++d ++v +tY g Hnh+ Vang0605s00070.1 1 MDDGYKWRKYGKKTVKNNSNPRNYYKCSGAGCSVKKRVERDRNDSNYVLTTYVGVHNHH 59 69********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-27 | 1 | 61 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.633 | 1 | 61 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-29 | 1 | 60 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-26 | 1 | 61 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-23 | 2 | 59 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MDDGYKWRKY GKKTVKNNSN PRNYYKCSGA GCSVKKRVER DRNDSNYVLT TYVGVHNHHT 60 PSSYYTQMPL LHSDDWNLLP SATQNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-21 | 1 | 62 | 17 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-21 | 1 | 62 | 17 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0605s00070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-106 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421243.1 | 2e-59 | PREDICTED: probable WRKY transcription factor 51 | ||||
Swissprot | Q93WU9 | 2e-31 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A0L9UE90 | 4e-58 | A0A0L9UE90_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3REI8 | 4e-58 | A0A0S3REI8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007137588.1 | 3e-50 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 7e-34 | WRKY DNA-binding protein 51 |
Publications ? help Back to Top | |||
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