PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g09220.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 418aa    MW: 46321.2 Da    PI: 6.2559
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g09220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.7e-083543872154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Vang05g09220.1 354 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 387
                     469*****************************87 PP
2ELK28.82.7e-10308329122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  Vang05g09220.1 308 ELKHELKQGYKEKIVDIREEIL 329
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-20154198IPR005540KNOX1
PfamPF037904.7E-18156197IPR005540KNOX1
SMARTSM012563.3E-15196251IPR005541KNOX2
PfamPF037911.7E-12211250IPR005541KNOX2
PROSITE profilePS512139.969308328IPR005539ELK domain
SMARTSM011886.1E-4308329IPR005539ELK domain
PfamPF037899.7E-7308329IPR005539ELK domain
PROSITE profilePS5007111.726328391IPR001356Homeobox domain
SuperFamilySSF466894.71E-16330393IPR009057Homeodomain-like
SMARTSM003894.7E-11330395IPR001356Homeobox domain
CDDcd000862.64E-12331392No hitNo description
Gene3DG3DSA:1.10.10.604.3E-25335392IPR009057Homeodomain-like
PfamPF059201.2E-17348387IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAYHNPQDLP LHHFTDQQQH HNQTLTDASL LSDPTSKPPS DPHQPAPNWL NNALLRTHYT  60
NSTTTNNNND NSNSDTNVNA ANNSGTNFLN LHTAAADSGQ WLARPILHRN QSEIIDDVTA  120
AGDSAMTGAG SGDLKSEAAA VEGGGDGLMN WQNARFKAEI LSHPLYEQLL SAHVACLRIA  180
TPVDQLPRID AQLAQSQNVL AKYSAFGQAI SHYVLLLCSF KEQLQQHVRV HAMEAVMACW  240
EIEQSLQSLT GVSPGEGTGA TMSDDEDEQV DSDANLFDGG LDGPDSMGFG PLIPTENERS  300
LMERVRHELK HELKQGYKEK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE  360
EDKARLVQET GLQLKQINNW FINQRKRNWH SNPSTSTVLK SKRKRSNAGD NSADHHM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384404RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g09220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422229.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A1S3U6970.0A0A1S3U697_VIGRR; homeobox protein knotted-1-like 3 isoform X1
STRINGXP_007136985.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3