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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vang05g07280.1 |
Common Name | LR48_Vigan08g211800 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
NAC |
Protein Properties |
Length: 372aa MW: 42863.9 Da PI: 5.9071 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vang05g07280.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 181.2 | 2.7e-56 | 15 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
+ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
Vang05g07280.1 15 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-DVIKDVDLYKIEPWDLQEicRIGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 108
69****************************.9***************954555442556************************************ PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+s k+el+g++ktLvfykgrap+g+k+dW+mheyrle
Vang05g07280.1 109 YS-KHELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 144
**.999*****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 372 aa
Download sequence Send
to blast |
LQESAEENME SFTHVPPGFR FHPTDEELVD YYLRKKVASR RIDLDVIKDV DLYKIEPWDL 60 QEICRIGTEE QNEWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKAIYS KHELIGMRKT 120 LVFYKGRAPN GQKSDWIMHE YRLETEENGT PQASSQEEGW VVCRVFKKRV TTMRKVNEHD 180 SPSWYDEQVS FIQDMDSPKQ TSQSNLVYQL PYPCKKELDV PYQMPRDHFL PLLESPKLLQ 240 SASAITPNPM APYLLDHVNH STTLLPSLLI QEEHVIGQQI NLQTTYDNSN CNDQAVDQVT 300 DWRVLDKFVA SQLSQDGSKE NAYSNTSASI FHGIDSGNCN VQFRHFDKHE MVVPQENAST 360 SNSSCPIALW K*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |