PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g06130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 434aa MW: 48342.1 Da PI: 7.0017 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.7 | 3.1e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+W++ ++ g++R++k+c++rw +yl Vang05g06130.1 15 KGPWTPEEDNILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 6 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.923 | 10 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.59E-24 | 16 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.99E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS50090 | 4.019 | 63 | 89 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-8 | 66 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 69 | 67 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MMGRAPCSDE SGLKKGPWTP EEDNILVDYI QKHGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEEEQQLII NLHAVLGNNL QQLLTATNIF TNTLDINALR LQSDATELAK 120 LQLLHNMLQV LVASPASNLD LLNPFGSSLP DEILGLDQSK LQNLYNSSTG FLSQNQSNFF 180 QSFEAPPQQQ ALPTGYNHMN GGSNRSCMKS EKVDEQLDVP YSFSTALDSL PNLVSATPEC 240 SSGKQMENMV NPNEFSDPSS TSTTFEMLGD FMYEEVTDAY WKDLIENSCL VPMKLKMDSS 300 LYKVWVAGVR LPPLCFNCDV SSRTALAVIF SKGSRCGLPE FTSSIVLQPR RQLDNRHCSS 360 ISPPQASLGL ISLAVYRLPL SRLHSRELLF VVWYRDSCAS KGQFSNIAVY AVLYEPHLFH 420 QTCVINAHCS TKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-17 | 13 | 93 | 5 | 84 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g06130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432108.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
TrEMBL | A0A0S3SEJ2 | 0.0 | A0A0S3SEJ2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007131513.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 7e-63 | myb domain protein 9 |