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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g04610.1 | ||||||||
Common Name | LR48_Vigan04g240000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 121aa MW: 13945 Da PI: 11.3394 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.2 | 2.6e-11 | 39 | 86 | 4 | 51 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++ rr+q+NRe+ArrsR RKk+ +e+L+ k L +N+ Lk++l + Vang05g04610.1 39 ERKLRRMQSNRESARRSRYRKKKHLENLTSQLKRLRIQNRFLKNRLAS 86 5789***************************************66544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-9 | 33 | 87 | No hit | No description |
SMART | SM00338 | 7.6E-9 | 36 | 107 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.128 | 38 | 85 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.2E-9 | 39 | 87 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.34E-11 | 40 | 94 | No hit | No description |
CDD | cd14702 | 3.61E-15 | 41 | 91 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 43 | 58 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MLTQSDIEDL FSLINKSIDR PSPGSGSQGS NRTVYSSEER KLRRMQSNRE SARRSRYRKK 60 KHLENLTSQL KRLRIQNRFL KNRLASTMHQ HLLLSLHNDH LKSEAIAHMA TLSDLCGILF 120 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g04610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420493.1 | 5e-82 | PREDICTED: bZIP transcription factor 44-like | ||||
TrEMBL | A0A0L9UI14 | 1e-80 | A0A0L9UI14_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RBR2 | 1e-80 | A0A0S3RBR2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA04G05030.2 | 2e-67 | (Glycine max) | ||||
STRING | XP_007136783.1 | 1e-67 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5996 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 4e-16 | basic leucine-zipper 5 |
Publications ? help Back to Top | |||
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