PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang05g03420.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 913aa MW: 101586 Da PI: 5.7171

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang05g03420.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	54.9	1.7e-17	613	647	18	52
RWP-RK 18 ikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ + +++vc+T+LKriCRq+GIkRWP+Rkik++ Vang05g03420.1 613 VRECSTSVQVCTTTLKRICRQHGIKRWPSRKIKKV 647 56788999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	9.6E-5	220	319	IPR029016	GAF domain-like
PROSITE profile	PS51519	12.127	572	667	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-13	616	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.19E-23	817	902	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.3E-23	818	898	No hit	No description
PROSITE profile	PS51745	26.975	818	901	IPR000270	PB1 domain
SMART	SM00666	2.1E-24	818	901	IPR000270	PB1 domain
Pfam	PF00564	6.7E-19	819	899	IPR000270	PB1 domain
CDD	cd06407	8.22E-42	819	899	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
LRLALFLLKQ PPMMRDGGVT SSSASMMEAP PPDGTITTTT MDFDYMGELF LDGCWLEASV 60 DGSDFLPQSP SFSNPLFDPS FSWPALETNH DESQGAAFGT QQEGHNNNNN MVNVVVGGGQ 120 ELQPETITTE GASEGVRRWR FAPTPAPAPG PSIMEKLIRA LMWIKDYNRN KNMLIQIWVP 180 VHRGGRPILA ANDILFSLDS RSVNLAKYRE ISVRYEFSAE EGEVKELVPA EKGGSKELLP 240 GLPGRVFRDK VPEWTPDVRF FRSDEYPRVD HAQEYDVRGS LAVPIFEQGS KMCLGVIEVV 300 MTTQQINYTP ELESVCKALE VVLNMHLLIL KGHICSRSVL GMSLLSLAVD LRSSKQLSIH 360 NVKACNRSYE AVLPEIQLVL RSACEMHRLP LAQTWIPCVQ QGKEGCRHSE DNYLLCISPV 420 EQACYVGDPK IKPFHESCTE HHLLKGEGVA GGAFVTNQPC FSDDITSLSK KDYPLSHHAR 480 LFGLRAAVAI RLRSILNDTD DFVLEFFLPV DCIDSEEQRK MLTSLSIIIQ KLCHSLRVIS 540 DKELEEANLS IDEMISSVEG GFDRTVICEE LQHKGTVASL DTEEKISETT GRKFSDPRQQ 600 QESPILKGNF DCVRECSTSV QVCTTTLKRI CRQHGIKRWP SRKIKKVGHS LQKLQLVIDS 660 VQGASGAFQI DSFYSNFPEL ASPNLSGTSM FSTLNQTDNP NSISTQPDPG SLSPEGTSKS 720 PSSSCGQSSI SSHSCSSMSE LQQQHHTTNI AGNKDSTMAG EDSADVALKR IRSEAELKSL 780 NEDKAKLLSR SLSQETLGEH PKNQYERPLL KTSSKVDAHR VKVTYGDEKA RFRMPKNWGY 840 EDLVQEIGRR FNVSEMSKFD VKYLDDDSEW VLLTCDADLE ECIDVCRSSE KATIKLSLQI 900 SSHSLRSSLE FR*

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

LRLALFLLKQ PPMMRDGGVT SSSASMMEAP PPDGTITTTT MDFDYMGELF LDGCWLEASV  60
DGSDFLPQSP SFSNPLFDPS FSWPALETNH DESQGAAFGT QQEGHNNNNN MVNVVVGGGQ  120
ELQPETITTE GASEGVRRWR FAPTPAPAPG PSIMEKLIRA LMWIKDYNRN KNMLIQIWVP  180
VHRGGRPILA ANDILFSLDS RSVNLAKYRE ISVRYEFSAE EGEVKELVPA EKGGSKELLP  240
GLPGRVFRDK VPEWTPDVRF FRSDEYPRVD HAQEYDVRGS LAVPIFEQGS KMCLGVIEVV  300
MTTQQINYTP ELESVCKALE VVLNMHLLIL KGHICSRSVL GMSLLSLAVD LRSSKQLSIH  360
NVKACNRSYE AVLPEIQLVL RSACEMHRLP LAQTWIPCVQ QGKEGCRHSE DNYLLCISPV  420
EQACYVGDPK IKPFHESCTE HHLLKGEGVA GGAFVTNQPC FSDDITSLSK KDYPLSHHAR  480
LFGLRAAVAI RLRSILNDTD DFVLEFFLPV DCIDSEEQRK MLTSLSIIIQ KLCHSLRVIS  540
DKELEEANLS IDEMISSVEG GFDRTVICEE LQHKGTVASL DTEEKISETT GRKFSDPRQQ  600
QESPILKGNF DCVRECSTSV QVCTTTLKRI CRQHGIKRWP SRKIKKVGHS LQKLQLVIDS  660
VQGASGAFQI DSFYSNFPEL ASPNLSGTSM FSTLNQTDNP NSISTQPDPG SLSPEGTSKS  720
PSSSCGQSSI SSHSCSSMSE LQQQHHTTNI AGNKDSTMAG EDSADVALKR IRSEAELKSL  780
NEDKAKLLSR SLSQETLGEH PKNQYERPLL KTSSKVDAHR VKVTYGDEKA RFRMPKNWGY  840
EDLVQEIGRR FNVSEMSKFD VKYLDDDSEW VLLTCDADLE ECIDVCRSSE KATIKLSLQI  900
SSHSLRSSLE FR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang05g03420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017436701.1	0.0	PREDICTED: protein NLP4-like isoform X1
Refseq	XP_017436702.1	0.0	PREDICTED: protein NLP4-like isoform X2
TrEMBL	A0A0L9V9P9	0.0	A0A0L9V9P9_PHAAN; Uncharacterized protein
STRING	XP_007136019.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein