PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g01610.1
Common NameLR48_Vigan09g019100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 221aa    MW: 24384.9 Da    PI: 8.2505
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g01610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-182873147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l  +v ++G+++W++I+r++  gR++k+c++rw + 
   Vang05g01610.1 28 KGPWSAEEDRILTSLVDRYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 73
                     79*****************************9.***********985 PP
2Myb_DNA-binding59.47.9e-1982124347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++++Ede ++ a++q+G++ W+tIar ++ gRt++ +k++w++ 
   Vang05g01610.1  82 PFSPQEDETIIAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 124
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.592378IPR017930Myb domain
SuperFamilySSF466891.73E-3125121IPR009057Homeodomain-like
SMARTSM007171.7E-152776IPR001005SANT/Myb domain
PfamPF002494.2E-172873IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-252981IPR009057Homeodomain-like
CDDcd001671.48E-143072No hitNo description
SMARTSM007173.8E-1679127IPR001005SANT/Myb domain
PROSITE profilePS5129422.11279129IPR017930Myb domain
CDDcd001673.58E-1382125No hitNo description
PfamPF002491.6E-1582124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-2482128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEAINRTSST ASSSSDSSSS DSNPHRIKGP WSAEEDRILT SLVDRYGPRN WSLISRYIKG  60
RSGKSCRLRW CNQLSPTVQH RPFSPQEDET IIAAHAQYGN RWATIARLLP GRTDNAVKNH  120
WNSTLKRRAK AFLDINVNNA NNEAATSSAP PRSFDDDPLT ALTLAPPGLS SAAVAEDTVL  180
DHRVSPESAP AGFWDMMRDV IAREVKEYVS SNFSDNSNFH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-422312953159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-422312953159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g01610.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435553.11e-161PREDICTED: transcriptional activator Myb-like
SwissprotQ9SN125e-57MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A0L9V9H51e-160A0A0L9V9H5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RBA81e-160A0A0S3RBA8_PHAAN; Uncharacterized protein
STRINGXP_007136655.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-58myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]