PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 156aa MW: 17437.4 Da PI: 9.459

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang05g01270.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.1	8.9e-18	31	80	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Vang05g01270.1 31 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFYLRG 80 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	5.43E-21	31	89	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.062	31	88	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-37	31	94	IPR001471	AP2/ERF domain
CDD	cd00018	8.48E-28	32	90	No hit	No description
Pfam	PF00847	3.3E-11	32	80	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.0E-30	32	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-12	32	43	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-12	70	90	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0005634	Cellular Component	nucleus
GO:0001078	Molecular Function	transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MEEGLGDCCS SNSTTTRKTQ KRKQQQHQDK PYRGIRMRKW GKWVAEIREP NKRSRIWLGS 60 YATPVAAARA YDTAVFYLRG PSARLNFPEL LFQDDDVSTQ EGNMSADCIR KKATQVGARV 120 DALQTALQSS SSHSANSSHV SSDKPDLNEY PKPED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-15	28	88	2	63	ATERF1
3gcc_A	2e-15	28	88	2	63	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	23	RKTQKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang05g01270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017434989.1	1e-114	PREDICTED: ethylene-responsive transcription factor RAP2-1-like
Swissprot	Q8LC30	1e-50	RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBL	A0A0L9V927	1e-113	A0A0L9V927_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RAZ5	1e-113	A0A0S3RAZ5_PHAAN; Uncharacterized protein
STRING	GLYMA04G04355.2	2e-86	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1290	32	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	3e-51	DREB and EAR motif protein 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]