![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang05g01190.1 | ||||||||
Common Name | LR48_Vigan04g245700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 452aa MW: 51384.3 Da PI: 4.9015 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4.2e-11 | 394 | 442 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +rW++ E++ l+++v+++G+g+Wk+I + + + Rt+ ++k++w++ Vang05g01190.1 394 KRWSQLEEDTLKNGVEKFGKGNWKLILNAHQdifEERTEVDLKDKWRNM 442 69********************************9************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.867 | 388 | 447 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-12 | 389 | 446 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-6 | 392 | 445 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-9 | 394 | 442 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.30E-17 | 394 | 444 | No hit | No description |
SuperFamily | SSF46689 | 4.52E-14 | 395 | 447 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 452 aa Download sequence Send to blast |
MDAHGQWLLE FLLRSPDTEN KDNLIKDVLR MISVSDLDFR IKKIFLLKTL QNDFSSHSIT 60 ETLLKTLELL EEVFRCDASP VTATMSAAYC AVAVECTIKY LQVNLYNHNA PYLRAVNRIW 120 QLRIPQMIGS GSREGSLLFS VELEQWRKDI ETSVLDLQVR ERLASIDTRR DAIIKLRAFL 180 EEAWTVMDSS FGPLAATEHK RNQEGEVQKC SIVAAENLHL PKTIEVEKIG DCISEELLAK 240 DSLAKIVEVE KVGDCISGEL QDMAKNSLPT TVEVEKVGDC ISEEVQALAK DTLTTTMEDN 300 EDARQTVEAD VSSPQDINDN EADHVEKGQA SIPSNCEQRP NLMEKNSTAR VDEWDSIDGL 360 EGVSRFNLPS PKRRKLPPLK IYKPTDITKR RKAKRWSQLE EDTLKNGVEK FGKGNWKLIL 420 NAHQDIFEER TEVDLKDKWR NMTRYEFANK S* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 372 | 391 | RRKLPPLKIYKPTDITKRRK |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang05g01190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421907.1 | 0.0 | PREDICTED: telomere repeat-binding protein 3-like | ||||
TrEMBL | A0A0L9UI71 | 0.0 | A0A0L9UI71_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RAC8 | 0.0 | A0A0S3RAC8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007136185.1 | 1e-173 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2824 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58340.2 | 8e-11 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|