PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang05g00760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 678aa MW: 74377.9 Da PI: 6.8137 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.2 | 7.4e-10 | 420 | 457 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e++ LA+++gLt +qV++WF N R + Vang05g00760.1 420 FEHflHPYPKDSEKTMLARQTGLTRSQVSNWFINARVR 457 664559******************************88 PP | |||||||
2 | BELL | 112.9 | 1.8e-36 | 283 | 354 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+l+kk akL s+l+eVd rYkqy++++q v+ssF++vag+g+akpYt+lAl++iS hFrcL+d i++qi Vang05g00760.1 283 EKQDLHKKLAKLRSMLDEVDSRYKQYYQKMQNVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDSITGQI 354 6799******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.0E-47 | 201 | 352 | IPR006563 | POX domain |
Pfam | PF07526 | 2.0E-45 | 207 | 351 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.438 | 398 | 461 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-10 | 401 | 465 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.65E-13 | 401 | 462 | No hit | No description |
SuperFamily | SSF46689 | 2.1E-17 | 402 | 467 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 404 | 467 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-18 | 418 | 457 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 678 aa Download sequence Send to blast |
LPKIMATYNP CSSNQRGAVP MLCLREPLHN SYPETPILPS NMTLLYMNSG SYSEALPGNS 60 QQQSNCFVVP SPSVGASNST AEQQEILANI GGYQIGVHDF SAWREGRSEM LVRQSIDGHN 120 LQGQGLSLSL GTHMPSGIQL PSVHDRNHCS NLDSFLGANP SLSANEIYQN GSSRHSENFP 180 PVLPEASHDL NKADFSFPGI SSVGRTVPTS KYLKAVQQLL DEVVDIRQAI KRPETRSHGT 240 HENSPKNSKE GGELLENERP SATGVPNSQV SASNSSCELS HAEKQDLHKK LAKLRSMLDE 300 VDSRYKQYYQ KMQNVVSSFD VVAGCGAAKP YTALALQTIS CHFRCLRDSI TGQIRATQKS 360 LGEHDASESN KGVGMARLKY VDHQVRQQRA LQQLGMMQHA WRPQRGLPES SVSILRAWLF 420 EHFLHPYPKD SEKTMLARQT GLTRSQVSNW FINARVRLWK PMIEDMYKQD VSDVDMDSTS 480 SSENVSKATK SDVKISNDTV DDSQHCQSPI VTDTNHGGGQ AKDFGYDQVL DTKIMASTGL 540 ASHEVETEHR SGKQSGEKRP NLDNCGLFSD NMIVQSDRAT NDDRFIAVGS TCQMSEFESF 600 KSGSGVSLTL GLQHCEGGNF LPGETHLSLV SMKENGIYRS AGAASTVGVH TAELEHVGAG 660 NQRQRFSSPH MLHDFVV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-17 | 407 | 464 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-17 | 407 | 464 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang05g00760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014501265.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
Refseq | XP_014501267.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
Refseq | XP_014501269.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A0S3RAJ9 | 0.0 | A0A0S3RAJ9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135942.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-113 | BEL1-like homeodomain 6 |