PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GATA

Protein Properties

Length: 104aa MW: 11565.3 Da PI: 8.2371

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang05g00340.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	38.6	1.5e-12	80	103	9	32
GATA 9 TplWRrgpdgnktLCnaCGlyyrk 32 Tp++Rrgp+g+ +LCnaCGl ++ Vang05g00340.1 80 TPMMRRGPSGPASLCNACGLSWAN 103 **********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	2.6E-9	79	103	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	8.08E-6	79	102	No hit	No description
Pfam	PF00320	2.4E-10	80	103	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MRVLLLRLIL ISQCVETPPQ IQNQNHVVAA EMGCEGEYGS EAHRAASLSR VHRSKSQFIL 60 SKIHESEQDV FHSEIFSKCT PMMRRGPSGP ASLCNACGLS WANR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang05g00340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	5e-39	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017420519.1	2e-55	PREDICTED: GATA transcription factor 25-like
Swissprot	Q9LRH6	7e-15	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A1S3U082	2e-49	A0A1S3U082_VIGRR; GATA transcription factor 25
STRING	XP_007137337.1	5e-29	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24296	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	3e-17	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]