PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g00050.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Nin-like
Protein Properties Length: 584aa    MW: 64515.7 Da    PI: 7.3633
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.99.5e-29356407152
          RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     aek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  Vang05g00050.1 356 AEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 407
                     589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.291346427IPR003035RWP-RK domain
PfamPF020422.5E-24360407IPR003035RWP-RK domain
SuperFamilySSF542771.82E-23473569No hitNo description
Gene3DG3DSA:3.10.20.2402.3E-22483565No hitNo description
PfamPF005644.0E-17484566IPR000270PB1 domain
PROSITE profilePS5174523.891484567IPR000270PB1 domain
SMARTSM006664.1E-24484567IPR000270PB1 domain
CDDcd064075.84E-41485566No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MEYGGFSDIF APETEFMDEL FVEGCWVETR VGCGTEASKW NRSMESNGAH IIFEEESEAE  60
SLMVGKRWWI GPRGNPGPSS SVKERLVVAV GYLKEYAKNS NMVIQVWVPA RRGCEVGIHH  120
HQDFPYTLDY TNNGDATGSF QFHEDWLSDH WPPNIRFLRT HDYTRLHHYD LRPGSLALPV  180
FQRGTGICLV QVLTCVCKAH ELPLALTWAP CIQQGKSGCG HSNDENYVST VDPACFVADV  240
DVLGFLEACS EYHLLGGQGV VGTAFTTSKP CFANDITAFT KAEYPLAHHA NMFGLHAAKG  300
KGVSVSLEYL QEPKQEFKVT TNGNEQVFSD LEGTSGAGVG GRRGGRKSGD KRRTKAEKTI  360
SLPVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVGHS LRKLQLVIDS  420
VQGAEGAIQI GSFYTSFPEL SSANGVSESP KINSDNSKFY SENGLFSNQG VTSTSSCSQS  480
CGGTFRVKAT FGDEKIRFSL QPNCGFRDLQ MEIARRFNLK EMSKIQVKYL DDAQEWVLLT  540
CDADLEECKD INRSSQSRTV RLFLFHASPL NHSTNAFGST SPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022636040.10.0protein NLP2-like
TrEMBLA0A0S3R9W00.0A0A0S3R9W0_PHAAN; Uncharacterized protein
STRINGXP_007137300.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.27e-57Nin-like family protein