PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0548s00060.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 167aa MW: 18965.7 Da PI: 7.5518

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0548s00060.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	50	7.7e-16	40	72	46	78
TSSEEETTT--SS--S-STTTT-------S--- CS SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 srfh +sefD++krsCrrrLa+hnerrrk+++ Vang0548s00060.1 40 TSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 72 69****************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.041	1	70	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.8E-5	40	57	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.37E-12	41	75	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.9E-9	41	69	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MEFGGNIFCL SNRDQNGNTN ANAFAWDSWQ TTTSNNNNTT SRFHVVSEFD DSKRSCRRRL 60 AGHNERRRKS SHDSVARNSS QGFEYIGGCA LSLLSSRSDS WLSPSDLSTR CSAALRELIA 120 ENRAAIMARQ FVSDRDWHIQ HHAVEDMKEI QPESNYFPQQ MFPQTQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0548s00060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-143	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013448322.1	4e-72	squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	4e-25	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	3e-25	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A392Q4L5	9e-73	A0A392Q4L5_9FABA; Squamosa promoter-binding-like protein 7-like (Fragment)
STRING	XP_004513942.1	1e-69	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9613	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	8e-13	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]