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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g17420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 401aa MW: 44440.9 Da PI: 7.9688 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.5e-18 | 78 | 125 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g++R++k+c++rw +yl Vang04g17420.1 78 KGLWSPEEDEKLLRHITKHGHGCWSSVPKQAGLHRCGKSCRLRWINYL 125 678*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-28 | 70 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.999 | 73 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 77 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 78 | 125 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.85E-22 | 80 | 153 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-12 | 81 | 125 | No hit | No description |
PROSITE profile | PS50090 | 4.252 | 126 | 168 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-8 | 129 | 154 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 16 | 130 | 188 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
LPLHFPVFNS HNLSRSHILP ITVWLSATPA DLSPTPTHKF NSRTHQLIGK VHPFGGVRSY 60 QKLQMGRHSC CYKQKLRKGL WSPEEDEKLL RHITKHGHGC WSSVPKQAGL HRCGKSCRLR 120 WINYLRPDLK RGTFSQEEEN LIIELHAVLG NSFKSDEGSF EQRASSIAPK AYEMEGSCSS 180 KINTKNDTNL IANCSNKDLF LDSYTTSCQP SDLMGNYPLQ MTDTLPTNSD SNHWFSPTAR 240 PIDINSEFTS NVMSILPPTT TSFLPSTSFC YKPSLAVPPE DISAPSFALN GPNYWEPSAS 300 NNSNGSNTSD GSREFTSSKN SVLSSWGLTE EAKWSEYLHN PMLMLAAPES LCNQIRPATH 360 LVPDNTLGSI ISGSKEQHQS QTSAIFSKDI QKLTAAFGHI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-14 | 76 | 153 | 5 | 81 | B-MYB |
1h8a_C | 8e-14 | 75 | 153 | 24 | 101 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g17420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416886.1 | 1e-170 | PREDICTED: transcription factor MYB86-like | ||||
TrEMBL | A0A151TXE3 | 1e-177 | A0A151TXE3_CAJCA; Transcription factor MYB86 | ||||
STRING | XP_007163255.1 | 1e-154 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1083 | 33 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 2e-57 | myb domain protein 61 |