PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 237aa MW: 26013.4 Da PI: 4.5169

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g17100.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.8e-18	25	83	1	46
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 +g+WT+eEd ll d+++ +G g W++Ia++++ gRt++++k++w++ Vang04g17100.1 25 KGPWTEEEDSLLFDYITVHGEGhwnsvarytgmqtfMWSKIAEHLP-GRTDNEIKNYWRT 83 79******************************************.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-19	20	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.258	20	89	IPR017930	Myb domain
SuperFamily	SSF46689	8.98E-14	22	81	IPR009057	Homeodomain-like
SMART	SM00717	5.5E-12	24	87	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-7	25	56	IPR001005	SANT/Myb domain
CDD	cd00167	3.65E-13	27	83	No hit	No description
Pfam	PF00249	4.5E-7	62	83	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MERSLSENGS SGTYGSSEEE MSITKGPWTE EEDSLLFDYI TVHGEGHWNS VARYTGMQTF 60 MWSKIAEHLP GRTDNEIKNY WRTRVVKQAK QLKCDVNSKQ FRDTLRFVWM PRMLERIQAQ 120 ASSSGQAQTT LMSNVQAHSD PCGGATATAS ASDAGFPSEA SSAAGVHGHS LSDSGASYSL 180 MGGGSWYSYG AEEGYGREWE ERNNGYSEIA GSGFGGVDMW TEENICFLQQ QLADDF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g17100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417457.1	1e-164	PREDICTED: transcription factor MYB108-like
Swissprot	Q9FGY3	1e-41	MYB78_ARATH; Transcription factor MYB78
TrEMBL	A0A0S3S059	1e-163	A0A0S3S059_PHAAN; Uncharacterized protein
STRING	XP_007163206.1	1e-122	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF875	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47190.1	4e-38	myb domain protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]