PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g17100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 237aa MW: 26013.4 Da PI: 4.5169 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.8e-18 | 25 | 83 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 +g+WT+eEd ll d+++ +G g W++Ia++++ gRt++++k++w++ Vang04g17100.1 25 KGPWTEEEDSLLFDYITVHGEGhwnsvarytgmqtfMWSKIAEHLP-GRTDNEIKNYWRT 83 79********************************************.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 20 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.258 | 20 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.98E-14 | 22 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-12 | 24 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-7 | 25 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.65E-13 | 27 | 83 | No hit | No description |
Pfam | PF00249 | 4.5E-7 | 62 | 83 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MERSLSENGS SGTYGSSEEE MSITKGPWTE EEDSLLFDYI TVHGEGHWNS VARYTGMQTF 60 MWSKIAEHLP GRTDNEIKNY WRTRVVKQAK QLKCDVNSKQ FRDTLRFVWM PRMLERIQAQ 120 ASSSGQAQTT LMSNVQAHSD PCGGATATAS ASDAGFPSEA SSAAGVHGHS LSDSGASYSL 180 MGGGSWYSYG AEEGYGREWE ERNNGYSEIA GSGFGGVDMW TEENICFLQQ QLADDF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g17100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417457.1 | 1e-164 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 1e-41 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A0S3S059 | 1e-163 | A0A0S3S059_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163206.1 | 1e-122 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF875 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 4e-38 | myb domain protein 2 |
Publications ? help Back to Top | |||
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