PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang04g17060.1 | ||||||||
Common Name | LR48_Vigan03g276700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 248aa MW: 28384.6 Da PI: 9.1912 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.1 | 9.1e-34 | 113 | 170 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp++v++tYeg+H h+ Vang04g17060.1 113 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFSDPSIVVTTYEGQHIHP 170 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 6.0E-99 | 1 | 247 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 2.4E-34 | 97 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-29 | 104 | 172 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.663 | 107 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 112 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.0E-26 | 113 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MELLGVQEYS PLLDLPLGSN MEVRQTSDHK EPPQTKKDWP EVTNQQPATP NSSSISSASS 60 EALNDEQKNR TVDQTHDEHK KTKEQLKAKK TNQKRQREPR FAFMTKSEVD HLEDGYRWRK 120 YGQKAVKNSP FPRSYYRCTS VSCNVKKRVE RSFSDPSIVV TTYEGQHIHP SPVMGRSNNF 180 GSLMSGSENY MSQYYQQHHQ QQLHVDALSS LGFLSPKNVT FPQQTALLSD YGRLQDVVPS 240 QQMFKQD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-28 | 102 | 173 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 7e-28 | 102 | 173 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang04g17060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT031230 | 0.0 | KT031230.1 Glycine max clone HN_CCL_159 WRKY transcription factor (Glyma03g37940.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418443.1 | 0.0 | PREDICTED: probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 6e-57 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A0L9U946 | 0.0 | A0A0L9U946_PHAAN; WRKY transcription factor | ||||
TrEMBL | A0A0S3S086 | 0.0 | A0A0S3S086_PHAAN; WRKY transcription factor | ||||
STRING | XP_007163195.1 | 1e-156 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47260.1 | 4e-52 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
---|---|---|---|
|