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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g15280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 229aa MW: 25236.8 Da PI: 4.3143 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 14 | 45 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartm 31 +g+W++eEd +l+d++ q+G+g +W + ++++ Vang04g15280.1 14 KGPWSPEEDAKLKDYIDQHGTGgNWIALPQKV 45 79********************9998877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-10 | 5 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.17E-6 | 8 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.097 | 9 | 50 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.9E-6 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.40E-4 | 16 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKDYID QHGTGGNWIA LPQKVDVVHR FMHSNLDLVS 60 VSFLWWEDIF TGCSGNNSSA SADSFFQAQE SFMDPTQKGQ FKGSSSSGML VFGGEATATS 120 CSSSDASCNN QIRQIMEPEF GEASFVEQIG VADNPLYIGV ENTTNKLMMF SSGGSASVSG 180 WTDKQNGLWE QNPLDYSLEE IKQLISTNNS FNNFLFDDKK TEERFTYY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g15280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017409988.1 | 2e-97 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A0L9TF98 | 6e-96 | A0A0L9TF98_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RYT2 | 6e-96 | A0A0S3RYT2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162775.1 | 3e-83 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-25 | myb domain protein 36 |