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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vang04g14470.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
C2H2 |
| Protein Properties |
Length: 254aa MW: 28419.6 Da PI: 10.3675 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang04g14470.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 10.8 | 0.0016 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ C++ Fs+ L H +H
Vang04g14470.1 44 FECKTCNRKFSSFQALGGHRASH 66
89**********99999998887 PP
|
| 2 | zf-C2H2 | 13.8 | 0.00017 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cg+ Fs L H+r+H
Vang04g14470.1 92 HECSICGQEFSLGQALGGHMRKH 114
78********************9 PP
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| 3 | zf-C2H2 | 13.8 | 0.00017 | 205 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cg+ Fs L H+r+H
Vang04g14470.1 205 HECTICGQEFSLGQALGGHMRRH 227
78********************9 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50157 | 10.699 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.98E-8 | 44 | 114 | No hit | No description |
| SMART | SM00355 | 0.19 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 1.4E-10 | 44 | 68 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 90 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 10.492 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.067 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 2.4E-9 | 92 | 116 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 7.21E-5 | 154 | 182 | No hit | No description |
| PROSITE profile | PS50157 | 10.097 | 156 | 183 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.43 | 156 | 178 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 4.8E-10 | 156 | 180 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.26E-6 | 202 | 228 | No hit | No description |
| PROSITE profile | PS50157 | 9.785 | 205 | 227 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.085 | 205 | 227 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 2.1E-9 | 205 | 229 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MVAMKRQRGN EGSENLDLAK CLMLFSCPEE SNKAQEKGFG SLEFECKTCN RKFSSFQALG 60
GHRASHKRQK VEGEELKEQG KSLSLWSKPK MHECSICGQE FSLGQALGGH MRKHRGISNE 120
GFVPIPSIDQ VIAKFPVLKR SNSTRLQRKH VEDVEFECKT CKRKFSSFQA LGGHRASHKR 180
SKLEGDELKA QPIGLSLGIR KPKMHECTIC GQEFSLGQAL GGHMRRHRAS INGDFSSVKH 240
VAEVPVLKRS NSTR
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
