PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g12880.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 585aa    MW: 64778.1 Da    PI: 6.3431
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g12880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.83.1e-1332255831374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lLl+cAeav++++  la+++L +l+  ++p gd+mqR+aa+ft  L+arl+     + +  p+++ s++ns e+l+++++ ++++P++kf+h
  Vang04g12880.1 225 LVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNA----TLSPKPSKSLSPSNSMEVLKIYQIVYQACPYVKFAH 315
                     68****************************************************9....777778888888999********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp  +p lRiTgvg+    s ++++etg+ L+++A++l++pfef++ v ++ledl+
  Vang04g12880.1 316 FTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPTTAPFLRITGVGP----SLDAVRETGRCLTELAHSLRIPFEFHA-VGEQLEDLK 405
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++L+ + gEalaVn v +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kv
  Vang04g12880.1 406 PHMLHRRVGEALAVNAVNRLHRVP------GNHLGNLLTMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAQRAKV 494
                     ***********************9......444557*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ ++++ei+n+v+ceg er+erhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ +gyr+ e++g+l+lgW+dr++v++SaWr
  Vang04g12880.1 495 EQYIFAPEIRNIVSCEGPERFERHERLEKWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWR 583
                     ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.612199563IPR005202Transcription factor GRAS
PfamPF035141.1E-130225583IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MINSLCGTLK SENNSRTKLQ ATSSNDSKKN ATQSSGDLDQ TGLTPPSLNL PSLKFDLDGD  60
VEVQSPDSSM WESFFADQLD ADFMISSPVR NVPSPQLSSY NCSYNYAHGM QGQSLSGCSP  120
PKFSSSHVGA FNSSHKGKGL SPLHRVFNSP NNQYMQHVEN LSLPAIEEFL EDYQGYSSTK  180
VSSDIATSSE CFDLSTQIPS SILDTLTLPD SSRYHGSEQD SGLQLVHLLL ACAEAVAKEE  240
YMLARRYLHH LNRVVTPLGD SMQRVAACFT DSLSARLNAT LSPKPSKSLS PSNSMEVLKI  300
YQIVYQACPY VKFAHFTANQ AIFEAFETEE RVHVIDLDIL QGYQWPAFMQ ALAARPTTAP  360
FLRITGVGPS LDAVRETGRC LTELAHSLRI PFEFHAVGEQ LEDLKPHMLH RRVGEALAVN  420
AVNRLHRVPG NHLGNLLTMI RDQAPNIVTL VEQEASHNGP YFLGRFLEAL HYYSAIFDSL  480
DATFPADSAQ RAKVEQYIFA PEIRNIVSCE GPERFERHER LEKWRKIMEG KGFKGVALSP  540
NAVTQSKILL GLYSCEGYRL TEDKGCLLLG WQDRAIVAAS AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-9723258226378Protein SCARECROW
5b3h_A2e-9723258225377Protein SCARECROW
5b3h_D2e-9723258225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g12880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027914631.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A4D6M7820.0A0A4D6M782_VIGUN; DELLA protein
STRINGXP_007161687.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-99RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]