PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g11970.8
Common NameLR48_Vigan03g159300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 349aa    MW: 39215.9 Da    PI: 6.5982
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g11970.8genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.57.7e-95234712374
            GRAS  12 vssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106
                     +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+  l++  +   ++++ s+t       ++ a+k fse+sP+l+f+++t+Nqa+leav
  Vang04g11970.8   2 IDAGNLELAHGILARLNHQLSPFGRPFQRAAFYFKEALQLGLHS--NANNSSMTFSPT---GLLLKIGAYKSFSEISPVLQFANFTCNQALLEAV 91 
                     6899****************************************..333333444444...4999****************************** PP

            GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                     eg +r+HiiDfdi+ G+QW +++q+La R++g+p+lRiT+++sp++ ++ el+ t+e+L+++A e++++fe ++l  ++l++   +   ++  Ea
  Vang04g11970.8  92 EGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPELRITAFVSPSHYDEIELSFTRENLKQYAGEINMSFELEILSFESLNSA-SWPQPLRDCEA 185
                     **************************************************************************966666666.44446799*** PP

            GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreiv 295
                     ++Vn+ +  ++ +      +s+ +  L++vk+l Pkvvv  ++ +d+++++F +++  al+ ys l++sl ++++  + +  +++E+ +l+++ +
  Vang04g11970.8 186 VVVNMPIGSFSSY------PSYLPLALRFVKQLMPKVVVTLDRSCDRTDAPFPQHLNFALQSYSGLLESLdAVNV--HPDVLQMIEKYYLQPAME 272
                     *******988887......777788*********************************************55554..5578899*********** PP

            GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++v  ++      +e+  +W++ l ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ L+svS Wr
  Vang04g11970.8 273 KLVLGRHGF----KERTLSWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHVEKRQSSLVLCWQRKDLISVSTWR 347
                     ***987776....68888************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.0361327IPR005202Transcription factor GRAS
PfamPF035142.7E-922347IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
LIDAGNLELA HGILARLNHQ LSPFGRPFQR AAFYFKEALQ LGLHSNANNS SMTFSPTGLL  60
LKIGAYKSFS EISPVLQFAN FTCNQALLEA VEGFDRIHII DFDIGFGGQW SSFMQELALR  120
NGGAPELRIT AFVSPSHYDE IELSFTRENL KQYAGEINMS FELEILSFES LNSASWPQPL  180
RDCEAVVVNM PIGSFSSYPS YLPLALRFVK QLMPKVVVTL DRSCDRTDAP FPQHLNFALQ  240
SYSGLLESLD AVNVHPDVLQ MIEKYYLQPA MEKLVLGRHG FKERTLSWKN LLLSSGFSPL  300
TFSNFTESQA ECLVQRTPGK GFHVEKRQSS LVLCWQRKDL ISVSTWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-30234630378Protein SCARECROW
5b3h_A1e-30234629377Protein SCARECROW
5b3h_D1e-30234629377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g11970.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418938.10.0PREDICTED: scarecrow-like protein 22
RefseqXP_017418939.10.0PREDICTED: scarecrow-like protein 22
SwissprotO813161e-137SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0L9U6140.0A0A0L9U614_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVM10.0A0A0S3RVM1_PHAAN; Uncharacterized protein
STRINGXP_007140802.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-124GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]