PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g10050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 130aa MW: 14674.1 Da PI: 10.0675 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.7 | 7.5e-08 | 3 | 85 | 8 | 90 |
FAR1 8 kevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++GF v++ +s g+ t + C ++gk ++ k + + + +++C +lk k + ++w+++ + +HnHela Vang04g10050.1 3 YDLGFVVVIVRSDIAtGVRGRKTFVILGCERWGKYRKYKAD--VVASVYDTRKCECSFRLKGKPCSdGARWVLKVMCGHHNHELA 85 6789999998887762455556666667******9999888..344444455566666666666567899*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-5 | 3 | 85 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MTYDLGFVVV IVRSDIATGV RGRKTFVILG CERWGKYRKY KADVVASVYD TRKCECSFRL 60 KGKPCSDGAR WVLKVMCGHH NHELAETLVG HPYAGRLNTS EKSLLVDMTR SKVTPANILL 120 TLKQNNDRNV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g10050.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416591.1 | 2e-86 | PREDICTED: uncharacterized protein LOC108327394 | ||||
TrEMBL | A0A0S3S7D4 | 7e-75 | A0A0S3S7D4_PHAAN; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1S3U388 | 1e-72 | A0A1S3U388_VIGRR; PKS-NRPS hybrid synthetase CHGG_01239-like | ||||
TrEMBL | A0A3Q0F1V6 | 6e-73 | A0A3Q0F1V6_VIGRR; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | GLYMA09G34850.1 | 1e-37 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF180 | 11 | 22 |