PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g08900.1
Common NameLR48_Vigan404s003500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 164aa    MW: 18450.9 Da    PI: 8.6354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g08900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-094383954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r RR+ri ++f  L++++P        K++ +++Le A++Y+k L
  Vang04g08900.1 43 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEGAIHYVKFL 83
                    699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.7863483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-133999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-114087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-134087No hitNo description
SMARTSM003539.0E-124089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-74383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MECINPTSCE GSSSKNKSKE KKGVKKGSKR GVKLSTDPQS VAARERRHRI SDRFKILQSM  60
VPGGSKMDTV SMLEGAIHYV KFLKTQIWLH QALINFVDFD HDEAPVYLPA EYNFPHQHSF  120
SLQQNPSSVS VHSHQQSLPQ PPLAQCCFQG EEDFDATMKY WPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g08900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140229.19e-93hypothetical protein PHAVU_008G095100g
SwissprotQ9M0412e-30BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A0L9TAN01e-119A0A0L9TAN0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RU101e-119A0A0S3RU10_PHAAN; Uncharacterized protein
STRINGXP_007140229.14e-92(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-30APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]