PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g08110.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 477aa    MW: 53345.1 Da    PI: 8.3228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g08110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.2e-33137194260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +Dg+nWrKYGqK+vkgse+prsYY+Ct+++C+vkkkve+s  d++++ei+Y+g+Hnh+k
  Vang04g08110.1 137 EDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSL-DGQITEIVYKGHHNHPK 194
                     7****************************************.***************85 PP
2WRKY101.93.6e-32305363159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK+vkg++++rsYY+Ct +gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Vang04g08110.1 305 LDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHD 363
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-28126195IPR003657WRKY domain
PROSITE profilePS5081122.986131195IPR003657WRKY domain
SuperFamilySSF1182903.4E-25132195IPR003657WRKY domain
SMARTSM007742.5E-36136194IPR003657WRKY domain
PfamPF031064.1E-25137193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-36290365IPR003657WRKY domain
SuperFamilySSF1182909.94E-28297365IPR003657WRKY domain
PROSITE profilePS5081136.483300365IPR003657WRKY domain
SMARTSM007741.7E-36305364IPR003657WRKY domain
PfamPF031062.8E-24306363IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEPSDSQIFA SPTTEALAAQ TFNWRNGSGE EEQQRDKEDE KNYSDFSFQT QIQSSSGMLQ  60
VQEPLKKQDM WKFNEPSKQT DYSSERTATK SEYPPIQSFS AEMASHKSEL QSNSVPGSGR  120
FNYANASQSV REQKRSEDGF NWRKYGQKQV KGSENPRSYY KCTHPNCSVK KKVEKSLDGQ  180
ITEIVYKGHH NHPKPQSTRR TSSQSIHQPS SSCTNSGISD QSVVTLGNPQ MDHFSMKEDS  240
SASVGKEEFE QTSQTSYSGG DEDNLGPEAK RWKGDNENDD YSASGSRTVR EPRVVVQTTS  300
EIDILDDGFR WRKYGQKVVK GNPNARSYYK CTAPGCSVRK HVERAAHDIK AVITTYEGKH  360
NHDVPAARGS ASYNMNRNPV NSSISAPIRP SAVNCYSSSS GFKNSLYNNT KLPATRNQES  420
FALDKFQNPG NFGQSALNKS MSSYTDHAPY SHATYSNAKD ERKDDSFLQS FLSKDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38124366578Probable WRKY transcription factor 4
2lex_A1e-38124366578Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g08110.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442339.10.0PREDICTED: probable WRKY transcription factor 33 isoform X1
SwissprotQ6IEQ71e-111WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0S3RTQ80.0A0A0S3RTQ8_PHAAN; Uncharacterized protein
STRINGXP_007140176.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-111WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]