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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g07890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 121aa MW: 13973.9 Da PI: 9.3764 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.3 | 2.3e-07 | 1 | 48 | 15 | 57 |
HHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 15 LeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 Le+lF+ r+p++e+ e+A++l ++ e +V+ FqN ++ek+ Vang04g07890.1 1 LEALFAFgIRNPNREQVHEIATRLkvymEIGEYNVYCLFQNYGYREKQ 48 89****88**********************************999996 PP | |||||||
2 | Wus_type_Homeobox | 44.5 | 3.7e-15 | 1 | 49 | 16 | 64 |
Wus_type_Homeobox 16 LeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 Le+l+ G+r+Pn+e++++i+++L+ y +i++ NV+ FQN Re+q+ Vang04g07890.1 1 LEALFAFGIRNPNREQVHEIATRLKVYMEIGEYNVYCLFQNYGYREKQR 49 899********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 7.0E-5 | 1 | 48 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
LEALFAFGIR NPNREQVHEI ATRLKVYMEI GEYNVYCLFQ NYGYREKQRC LKRSIASTSY 60 SPIPLLPPFM DGKKNGNYYF FFLFSNISIF IFFRSFKDNA NSARSSDTRS LSDPTCSSQS 120 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g07890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420310.1 | 3e-40 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
TrEMBL | A0A0L9U377 | 1e-45 | A0A0L9U377_PHAAN; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05770.1 | 3e-09 | WUSCHEL related homeobox 7 |