PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g05880.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 130aa    MW: 14311.1 Da    PI: 10.0962
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g05880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof116.41.2e-361468660
          zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                     +cprC s+ntkfCyynnys +qPryfCk+CrryWtkGG+lrnvP+Ggg+rk+++
  Vang04g05880.1 14 PNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRR 68
                    58**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-251068IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1921468IPR003851Zinc finger, Dof-type
PfamPF027011.5E-311468IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101652IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MERGWKANSV EISPNCPRCG SSNTKFCYYN NYSSTQPRYF CKGCRRYWTK GGSLRNVPIG  60
GGCRKSRRGK YNKALRQAHG PVGHSDDLRP SSSVVSDGPN IDLAQVYASF LNVKPDQDET  120
STGSPKLKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g05880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416764.12e-83PREDICTED: dof zinc finger protein DOF3.5
SwissprotQ9SVC54e-42DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A0L9U9D05e-82A0A0L9U9D0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZC25e-82A0A0S3RZC2_PHAAN; Uncharacterized protein
STRINGXP_007162976.12e-74(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.12e-44Dof family protein