PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g05780.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TALE | ||||||||
Protein Properties | Length: 700aa MW: 75762.4 Da PI: 7.1111 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.2 | 1.6e-09 | 402 | 439 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Vang04g05780.5 402 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 439 554459******************************88 PP | |||||||
2 | BELL | 94.5 | 9.5e-31 | 252 | 337 | 1 | 72 |
BELL 1 erqelqkkkakLlsllee..............VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+ +l+e V++rY+qy++q+++v+ssFe++ag+gsa+ Yt+lAl++iS++FrcLkdaia+q+ Vang04g05780.5 252 ERQEIQMKKAKLIAMLDEkdyeglivvdcmvvVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQV 337 79***************88888888888888799*************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.9E-54 | 179 | 335 | IPR006563 | POX domain |
Pfam | PF07526 | 5.5E-45 | 186 | 334 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 380 | 443 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-9 | 383 | 447 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.27E-12 | 383 | 444 | No hit | No description |
SuperFamily | SSF46689 | 7.27E-17 | 384 | 450 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 386 | 449 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-18 | 400 | 439 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
LLYQKPMATY FHHGNSEIQS GAADGLQTLV LMNPGYIHYS DAPSQPPPSH AAGNLVFLNP 60 AAVAGANSNG SFNPHAPPSH TQQFVGIPLP ASQDLNHHSM HGHHDVSALH GFLPRMQYNH 120 WNALDPASAA RDTPRAQQGL SLGLGSFREG QAPGMSGDDL RVSGGSPSSA SGVTNNGASG 180 IQSVFLSSKY LKAAHELLEE VVNVNNGIGT ELGKKSGGQT KVIGESSAAG SGDGSVGGEG 240 NGKRNSELST AERQEIQMKK AKLIAMLDEK DYEGLIVVDC MVVVEQRYRQ YHQQMEIVVS 300 SFEQAAGIGS ARTYTALALQ TISKQFRCLK DAIAGQVRAA NKSLGEEDCF GGKIEGSRLK 360 YVDHHLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK 420 QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEMKDHEQNG SEDKSSKSNG DSSTKMAAPA 480 EKGPSNETEA KSFSSKQEVS KSQNTAMVSV SRPSTSPLGG SVRNQSGFSF MGSSELEGIT 540 QGSPKKARNH EMMHSPNSVP SMNIDVKPNE ANNEQLSMKF GDERQGRNES SFMGNQTNFI 600 GGFGQYPIGD IGRFDAEQFA PRFSGNGVSL TLGLDSLPGT HQTFLPNQNI QLGRSLDIGE 660 PNEFGSINNS SPHSSAAYES ISMQNPKRFA AQLLPDFVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 389 | 446 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 389 | 446 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g05780.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418664.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_017418665.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_017418667.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-170 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0S3RZD6 | 0.0 | A0A0S3RZD6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162972.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-159 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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