PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g04260.4
Common NameLR48_Vigan03g040600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 444aa    MW: 48879.1 Da    PI: 8.0969
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g04260.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-113965127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  Vang04g04260.4 39 PGEPDCSYYIRTGLCRFGATCRFNHPP 65
                    5789*********************97 PP
2zf-CCCH31.23.7e-10107127727
                     SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                     r++++tGtCk+G++C+F+H++
  Vang04g04260.4 107 RYYLKTGTCKFGATCRFHHPR 127
                     79*****************96 PP
3zf-CCCH37.24.8e-12149173327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +++rtG+Ck+G++CkF+H++
  Vang04g04260.4 149 EPDCAYYLRTGQCKFGNTCKFHHPQ 173
                     789********************97 PP
4zf-CCCH38.52e-12305330227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ C+F+H++
  Vang04g04260.4 305 DQPECQFYMKTGDCKFGAVCRFHHPR 330
                     689*********************96 PP
5zf-CCCH38.12.7e-12350376127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  Vang04g04260.4 350 PGEPLCVFYSRYGICKFGPSCKFDHPM 376
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763966IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-84065IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-54366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-44464IPR000571Zinc finger, CCCH-type
SMARTSM003560.27102127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.235105128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4107127IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7107127IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713146174IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9149173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4152172IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5303330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624303331IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-9305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5306332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4309331IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7349376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821349377IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9351376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5352376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4354374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEFDAAIPVS REHLPQDAMW QINLRSSETM ESGPYPEHPG EPDCSYYIRT GLCRFGATCR  60
FNHPPNRKLA IAAARMKGEF PERIGQPECQ AWLNFICFQI VDIGIHRYYL KTGTCKFGAT  120
CRFHHPRDKA GIAGRVALNI LGYPLRPNEP DCAYYLRTGQ CKFGNTCKFH HPQPNNMVLS  180
MRSSPVYPSV QSPTTPGQQS YATGITNWPS SSYIPSPRWQ SPSSYAPLIL PQGMVSVPGW  240
SAYSGQMGSD SSQQTMGNGQ SYGTNRQSEP TNAGSQGAYS QFRSGSVPVG FYALQRENIF  300
PERPDQPECQ FYMKTGDCKF GAVCRFHHPR ERMIPAPDCV LSPIGLPLRP GEPLCVFYSR  360
YGICKFGPSC KFDHPMGVFT YNISASPSAD APGRRMLGSS SGTSALNLSS EGLVESGSAN  420
PRRLSLSETR QIPSGDDNID EEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g04260.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418890.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_022635658.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0L9U2M20.0A0A0L9U2M2_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TVL00.0A0A1S3TVL0_VIGRR; zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_007139732.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-177zinc finger protein 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]