PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0471s00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 117aa MW: 12938.3 Da PI: 9.5046 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 88.6 | 1.7e-27 | 6 | 68 | 5 | 68 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslk 68 ++e+vCyv+CnfCnt lavsvP +s++++vtvrCGhC++llsvn+ + q ++++ + + + Vang0471s00140.1 6 MATERVCYVHCNFCNTTLAVSVPCSSMLTIVTVRCGHCANLLSVNMGASLQPFPSQET-QLQRR 68 679***********************************************99999875.44433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.0E-29 | 7 | 69 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 117 aa Download sequence Send to blast |
MSMDMMATER VCYVHCNFCN TTLAVSVPCS SMLTIVTVRC GHCANLLSVN MGASLQPFPS 60 QETQLQRRDS VFLRLITGSL KRKYKELRPV IQISATEKLL ARLQKTGHIS LTFTLG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0471s00140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT095127 | 7e-82 | BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424141.1 | 3e-43 | PREDICTED: putative axial regulator YABBY 2 isoform X2 | ||||
TrEMBL | A0A4D6N9P5 | 2e-41 | A0A4D6N9P5_VIGUN; Uncharacterized protein | ||||
STRING | XP_007150001.1 | 3e-39 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 9e-25 | YABBY family protein |