PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g17670.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 560aa    MW: 62833.3 Da    PI: 6.3684
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g17670.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-1955110257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +kR+  t+ ql++Le++++ ++yp++e++ eLA++l+Lte+q++ WF+ rR k+kk
  Vang03g17670.1  55 KKRRLKTPAQLTALESFYNDHKYPTEEMKSELAEELELTEKQISGWFCHRRLKDKK 110
                     89****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-2135110IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1751114IPR009057Homeodomain-like
PROSITE profilePS5007116.95751111IPR001356Homeobox domain
SMARTSM003891.2E-1853115IPR001356Homeobox domain
CDDcd000864.72E-855110No hitNo description
PfamPF000461.5E-1655110IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
LSNGSHFPEN PVKKFAPLTP KLVREEGDSS QFLTTMEETT EMQSEENKLS MEKNKKRRLK  60
TPAQLTALES FYNDHKYPTE EMKSELAEEL ELTEKQISGW FCHRRLKDKK LLNDEVGANG  120
RQDRSSGVIQ DRGSGLVQDS CGSTKHGDYR YLDPKEVESH GLYNHEFSAA DMTYAHRNHH  180
YAENDSATDN TSSESCSSLQ DRLLPQGQDQ YDMEPSSHLM PNGSLPPLNP KGANNMGYKP  240
SGYLKVKGEI EHVSISAVKK QLGNHFQEDG PLLSVEFDTI PPGAFEGQIA DLANEGYYAA  300
NPALPNSPEV SAGKKQSSSS RYDSYFTKLR SQDSHMVGGD FGSLHGPDFQ DKKPHKQINQ  360
RASFHSFTNH LPHNNSSLDL YVDSTGEASA YNGGKNRRMG TKHGFEGMRS DSASYPSDHY  420
EENAVAVKQI DSLLDLYNNI NLKNVQKNEY VKSKPSNSIH KSQIYLNAEE KGLTKRMANE  480
EKFNDERKLR KQYHVPDGIR VLSNEKMVAK RAKVDPFESY DVKQTPLSDL EPRKVQRSAA  540
EMPSRFSEDE TAETSSSVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459KKRRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g17670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433993.10.0PREDICTED: homeotic protein proboscipedia-like isoform X1
TrEMBLA0A0L9VAN80.0A0A0L9VAN8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S7H50.0A0A0S3S7H5_PHAAN; Uncharacterized protein
STRINGXP_007146316.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-66HB-other family protein