![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang03g17670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 560aa MW: 62833.3 Da PI: 6.3684 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.5e-19 | 55 | 110 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t+ ql++Le++++ ++yp++e++ eLA++l+Lte+q++ WF+ rR k+kk Vang03g17670.1 55 KKRRLKTPAQLTALESFYNDHKYPTEEMKSELAEELELTEKQISGWFCHRRLKDKK 110 89****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-21 | 35 | 110 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-17 | 51 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-18 | 53 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.72E-8 | 55 | 110 | No hit | No description |
Pfam | PF00046 | 1.5E-16 | 55 | 110 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 560 aa Download sequence Send to blast |
LSNGSHFPEN PVKKFAPLTP KLVREEGDSS QFLTTMEETT EMQSEENKLS MEKNKKRRLK 60 TPAQLTALES FYNDHKYPTE EMKSELAEEL ELTEKQISGW FCHRRLKDKK LLNDEVGANG 120 RQDRSSGVIQ DRGSGLVQDS CGSTKHGDYR YLDPKEVESH GLYNHEFSAA DMTYAHRNHH 180 YAENDSATDN TSSESCSSLQ DRLLPQGQDQ YDMEPSSHLM PNGSLPPLNP KGANNMGYKP 240 SGYLKVKGEI EHVSISAVKK QLGNHFQEDG PLLSVEFDTI PPGAFEGQIA DLANEGYYAA 300 NPALPNSPEV SAGKKQSSSS RYDSYFTKLR SQDSHMVGGD FGSLHGPDFQ DKKPHKQINQ 360 RASFHSFTNH LPHNNSSLDL YVDSTGEASA YNGGKNRRMG TKHGFEGMRS DSASYPSDHY 420 EENAVAVKQI DSLLDLYNNI NLKNVQKNEY VKSKPSNSIH KSQIYLNAEE KGLTKRMANE 480 EKFNDERKLR KQYHVPDGIR VLSNEKMVAK RAKVDPFESY DVKQTPLSDL EPRKVQRSAA 540 EMPSRFSEDE TAETSSSVD* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 54 | 59 | KKRRLK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang03g17670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017433993.1 | 0.0 | PREDICTED: homeotic protein proboscipedia-like isoform X1 | ||||
TrEMBL | A0A0L9VAN8 | 0.0 | A0A0L9VAN8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S7H5 | 0.0 | A0A0S3S7H5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007146316.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5792 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03250.1 | 2e-66 | HB-other family protein |