PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g14050.1 | ||||||||
Common Name | LR48_Vigan09g122400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 225aa MW: 25387.8 Da PI: 6.8793 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.6e-08 | 37 | 81 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E +l+ +a + + ++ +W+++a++++ g+t +++ + Vang03g14050.1 37 KWTPAENKLFENALAVYDKDtpdRWHKVAEMIP-GKTVMDVVKQYK 81 8********************************.***998887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.121 | 30 | 84 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 31 | 82 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-9 | 34 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.52E-12 | 36 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.32E-8 | 37 | 83 | No hit | No description |
Pfam | PF00249 | 9.1E-7 | 37 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-4 | 135 | 162 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.79E-5 | 137 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00245 | 143 | 169 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
LCCDFGVMKW EMEILPPASP YMYNSNWLLD DNRTNTKWTP AENKLFENAL AVYDKDTPDR 60 WHKVAEMIPG KTVMDVVKQY KELEADVCNI EAGLIPIPGY STTTSPFTLD WVNTPGYDGF 120 KGLTAKRSSS GRPPEQERKK GVPWTEEEHK LFLLGLKKYG KGIAMALNPA HEQVFVSPYG 180 LNSYGFKVQG QSLHRSPLHE SSYLGPQTPN MVFQMQPSQH YSHA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-18 | 38 | 110 | 11 | 83 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g14050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017437148.1 | 1e-113 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-66 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0L9VBX7 | 1e-111 | A0A0L9VBX7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S699 | 1e-111 | A0A0S3S699_PHAAN; Uncharacterized protein | ||||
STRING | XP_007146740.1 | 1e-109 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40735 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-54 | MYB family protein |
Publications ? help Back to Top | |||
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