PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g13930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YA | ||||||||
Protein Properties | Length: 405aa MW: 44323.1 Da PI: 8.2517 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.8 | 3.1e-32 | 245 | 301 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +ksrkpylheSRh+hA+rR Rg+gGrF Vang03g13930.1 245 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKSRKPYLHESRHQHAMRRVRGTGGRF 301 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.1E-35 | 243 | 304 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.422 | 244 | 304 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.0E-28 | 246 | 301 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.7E-24 | 247 | 269 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 249 | 269 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.7E-24 | 278 | 301 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
VEVVVPTQRP RVSRTCAAQV RVTWATFFFC WVPLKGPDNL TRSPHPQSQP TIPGHASPLS 60 HTTHPLLPPA LPVPLLHVSL VTPQGSVDMQ SKSETANRLR SDPHSFQPGS VYSEPWWRGI 120 GYNPLAQTMA GANASNSSSL ECPNGDSESN EEGQSLSNSG MNEEDDDATK ESQRTAPNEP 180 GMCYKSLSRS VLWGHDGSLW SPAVGHSITV TDLQFPQICV IRNMGYPPFI GMPHARMPLP 240 LEMAQEPVYV NAKQYQGILR RRQARAKAEL ERKLIKSRKP YLHESRHQHA MRRVRGTGGR 300 FAKKSDAEGS NNSGKEKDNG ADSVLSSQSI SSSGSEPLHS DSAETWNSPN MQQDARAAKV 360 QNRFEAPSFQ NGSGSYNNHH GLQSSVYHSS SGERVEEGDR SGQN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-18 | 245 | 301 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g13930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017436676.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_017436677.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | A0A0L9VBV6 | 0.0 | A0A0L9VBV6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S6G7 | 0.0 | A0A0S3S6G7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007146701.1 | 1e-173 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4012 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 3e-59 | nuclear factor Y, subunit A1 |