PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g12570.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 603aa    MW: 67798.6 Da    PI: 6.2979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g12570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-07421458135
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgR 35 
                      + rW+  E+e l  +vk++G g+W+tI +       +R
   Vang03g12570.1 421 KRRWSSLEEETLRAGVKMFGEGNWATIKSFYSnifDNR 458
                      579************************87766555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-8415461IPR009057Homeodomain-like
PROSITE profilePS500906.609416461IPR017877Myb-like domain
SuperFamilySSF466891.25E-7418460IPR009057Homeodomain-like
CDDcd116603.70E-8422460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MDTDISRWVM EFLLRSSVPD SLIQKALIVL PLSGADSRLK KTLLLRTLRT LLLKASLSET  60
ALQIFEHLEE LDGDSTSVAL RRAYLAVAVE CTVKYLAAAP DDPEGVFSGA VKRIWRGRVA  120
ALEARRSGLV SGELAQWRDD VEAALGDSRA CERLADFNSR REAMKEVRAY LKEAWESMGP  180
SFLESVAAMS KGLTKEKEDF VISGDRCDND QDKGNNGDHG CMEGVAMHDE NQTKQQLEEK  240
IEANQEVGGC DLPLQGDKVI QKRNLRVKHK HSALRACHRG VKINYSEEGR SKHDSVPSSE  300
VKEVRESLKS SSYDLRALVK DPLPDALHLS EAIRSKLATS DTNIEPPIEK QSPNVDLPDP  360
DVCQTIVLFQ PNDANLGKKS SVCCSDLHQP NLMERNRSAQ TSEWNDSIDN SPQARQPKRR  420
KRRWSSLEEE TLRAGVKMFG EGNWATIKSF YSNIFDNRSG NLGGRSRSWQ KLVAQWLPCE  480
EEEAKWLPCE EEEAKWLPCE KEEAEAVPSE NEEAATHTRE GNPNLSFLSY SNDNFDSSFT  540
LCDQVLLKHH QIVQLVRTNW YPKPMHGSFK HFILPCLLST AQLKVPILVV RKIKSISRSE  600
LY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416422PKRRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g12570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436404.10.0PREDICTED: uncharacterized protein LOC108342963
RefseqXP_017436405.10.0PREDICTED: uncharacterized protein LOC108342963
RefseqXP_017436406.10.0PREDICTED: uncharacterized protein LOC108342963
TrEMBLA0A0L9VCQ90.0A0A0L9VCQ9_PHAAN; Uncharacterized protein
STRINGXP_007146880.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-13MYB_related family protein