PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g11510.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 1776aa    MW: 198081 Da    PI: 7.8386
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g11510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.73e-08112211593774
        trihelix   37 kmrergferspkqCkekwenlnkrykkikegekkrtse 74  
                      k++e g++rs+k+Ckek+en+ k+++++keg+ ++++e
  Vang03g11510.1 1122 KLAELGYNRSSKKCKEKFENIYKYHRRTKEGRCGKSNE 1159
                      7899**************************99887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016143.6E-233193IPR006501Pectinesterase inhibitor domain
SMARTSM008562.2E-2833188IPR006501Pectinesterase inhibitor domain
Gene3DG3DSA:1.20.140.401.3E-2635192IPR006501Pectinesterase inhibitor domain
SuperFamilySSF1011483.4E-2337192IPR006501Pectinesterase inhibitor domain
PfamPF040432.0E-1837188IPR006501Pectinesterase inhibitor domain
CDDcd157983.77E-2750194No hitNo description
SuperFamilySSF511261.38E-96233510IPR011050Pectin lyase fold/virulence factor
Gene3DG3DSA:2.160.20.109.4E-101234510IPR012334Pectin lyase fold
PfamPF010953.0E-18236292IPR000070Pectinesterase, catalytic
PfamPF010953.3E-99293499IPR000070Pectinesterase, catalytic
PROSITE patternPS005030355364IPR033131Pectinesterase, Asp active site
TIGRFAMsTIGR016147.1E-11526701IPR006501Pectinesterase inhibitor domain
SMARTSM008566.6E-22549699IPR006501Pectinesterase inhibitor domain
PfamPF040436.9E-13555699IPR006501Pectinesterase inhibitor domain
SuperFamilySSF1011486.28E-20555702IPR006501Pectinesterase inhibitor domain
Gene3DG3DSA:1.20.140.407.2E-18555701IPR006501Pectinesterase inhibitor domain
CDDcd157983.47E-24556705No hitNo description
Gene3DG3DSA:2.160.20.101.1E-1137461030IPR012334Pectin lyase fold
SuperFamilySSF511264.08E-1057481035IPR011050Pectin lyase fold/virulence factor
PfamPF010957.7E-1317511034IPR000070Pectinesterase, catalytic
PROSITE patternPS005030897906IPR033131Pectinesterase, Asp active site
TIGRFAMsTIGR016141.7E-2112391397IPR006501Pectinesterase inhibitor domain
SMARTSM008562.0E-3112411393IPR006501Pectinesterase inhibitor domain
Gene3DG3DSA:1.20.140.408.5E-3112431398IPR006501Pectinesterase inhibitor domain
SuperFamilySSF1011481.19E-2712441398IPR006501Pectinesterase inhibitor domain
PfamPF040438.5E-2012451393IPR006501Pectinesterase inhibitor domain
CDDcd157981.88E-3812481399No hitNo description
Gene3DG3DSA:2.160.20.102.1E-10514561768IPR012334Pectin lyase fold
SuperFamilySSF511268.48E-9714571768IPR011050Pectin lyase fold/virulence factor
PfamPF010955.4E-12514571756IPR000070Pectinesterase, catalytic
PROSITE patternPS00800014821501IPR018040Pectinesterase, Tyr active site
PROSITE patternPS00503016011610IPR033131Pectinesterase, Asp active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042545Biological Processcell wall modification
GO:0043086Biological Processnegative regulation of catalytic activity
GO:0045490Biological Processpectin catabolic process
GO:0005576Cellular Componentextracellular region
GO:0005618Cellular Componentcell wall
GO:0004857Molecular Functionenzyme inhibitor activity
GO:0030599Molecular Functionpectinesterase activity
GO:0045330Molecular Functionaspartyl esterase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1776 aa     Download sequence    Send to blast
MMTMLSFLFI LVLLPSFEAL SYEGIPSEIQ TQDMQALIAQ ACMDIENQNS CLTNIHNELT  60
KIGPPSPTSV MSAALKATLN EAIVAIDNMT KITTFSVSYR EQQAIEDCKE LLDFSVSELA  120
WSLGEMRRIR AGDTNVQYEG NLEAWLSAAL SNQDTCLEGF EGTDRRLESY ISGSLTQVTQ  180
LISNVLSLYT QLHTFPFKPP RNTTTAESDG TSEFPEWMTE GDQELLRAKP HGVRADAVVA  240
LDGSGHYRSI AEAVNAAPSH SQRRYIIYVK KGLYKENIDM KKKMTNIMLV GDAVSGKGFI  300
ARDMSFRNTA GPVNHQAVAL RVDSDQSAFY RCSVEGHQDT LYAHSLRQFY RECEIYGTID  360
FIFGNGAAVL QNCKIYTRVP LPLQKVTITA QGRKSPHQST GFTIQDSYIL ATQPTYLGRP  420
WKQYSRTVYI NTYMSGLVQP RGWLEWLGNF ALDTLWYGEY RNYGPGASLV GRVRWPGYHV  480
IKDASTASFF TVQRFINGDT WLPRTGVKFT AVYMFLSILL IFMAISKVFF CLFLVFLLSI  540
FFNSAFVASS SDSSDTICNL TPYPSFCESN SPYGHGDIHE YGRFFVDKSL SSSKKILSLL  600
SQYLKSPPKF SNSTIFAIQD CYLLVDLNKR FLSKTLKTIN STDALGGSEA EKFHTFLSAT  660
LTNQETCLNS LQETTSNPDK DLQTHLSNGT KLYSISLAIF KRGWKAKNNT ERKLERNYHI  720
MWEQKLYELI RRKGRKLLQL GADNVVVNQS VVVSPDGSGN YTTINDAVAA APNNSQGSNG  780
FFVIHVVGGV YEEYVSIPRQ KQYLMMIGDG INQTIITGNH SVVDGWTTFN SATFAVTAQG  840
FVAINITFRN TAGAIKHQAV ALRSGADLSA FYNCSFEGYQ DTLYTHSLRQ FYRNCDIYGT  900
VDFIFGNAAA VLQNCNIYPR LPMQNQFNAI TAQARTDVNQ NTGTSIHNCT ITGASDLAGS  960
NGTTKTYLGR PWKQYSQTVY VQSFMDSLID PLGWVAWSGD FALDTLYYAE FDNRGPGSDT  1020
SNRVTWPGNP KICSRSWRTF MSKEIFFLSI QMPSLLHALG SPPIPYTAIV IYSPETPLAN  1080
LEGGAATVSE GLKVEDGEVG DRNSAASQWP KEETMALLNI RKLAELGYNR SSKKCKEKFE  1140
NIYKYHRRTK EGRCGKSNEG NRRIAKTFPF GGSFSYLVGV NKELLYKKEK KTMGQKQRLV  1200
IIGVSTFLLV AMVVAVTVSV SLNNKGAKDA ENEETKSHVA SSMKAVKTLC APTEYQKECE  1260
DNLNANAGNI TDPRELIKIA FNVTISRISD GLGQTKLMHD VESDPRTKEA LDTCKQLMNL  1320
SIEEFNRSLQ RFSKFDLNNI DRILTSLKVW LSGAVTYQES CLDAFDNTTT DAGKKMHELL  1380
QTAMHMTSNG LAIITELSKT FSEMHLPKSG RRLLMTADDL PVLGNETDDD FDVPDWVENR  1440
GGLRRLLHMT GRKQMAHVVV AKDGSGNFTT INEALKHVPM KNLRPFIIYI KEGVYDEYVE  1500
VSRNMTHVVM IGDGGRKSRI TGSKNFIDGV GTYKTASAAI IGDFFVAIGM GFENTAGAEK  1560
HQAVALRVQS DRSIFYKCRM DGYQDTLYAH AMRQFYRDCS ISGTIDFVFG DAVAVLQNCT  1620
FVVRKPLANQ QCIVTAQGRK ESNQPSGLVI HGGSIVSDPL YYPVRFDNKA YLARPWKNFS  1680
RTIFMDSFID DLITPDGYMP WQTLEGLSGM DTCFYAEINN HGPGADISKR VKWEGIKALT  1740
KDVATGFLPS PFFHGDDWIR VTRVPYDSGL PSATH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gq8_A2e-9823317705319PECTINESTERASE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g11510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434698.10.0PREDICTED: probable pectinesterase/pectinesterase inhibitor 58
TrEMBLA0A445CND80.0A0A445CND8_ARAHY; Uncharacterized protein
STRINGXP_007146999.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-16Trihelix family protein