PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g11370.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 565aa    MW: 62808.1 Da    PI: 4.4877
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g11370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.3e-11267320147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqky 47 
                      r rWT eE++++++a k++G   W++I              ++t+ q++s+ qk+
   Vang03g11370.1 267 RERWTDEEHKKFLEALKLHGRA-WRRIEVLRYfilttehvGTKTAVQIRSHAQKF 320
                      78******************88.998865444445555555************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.48E-14261323IPR009057Homeodomain-like
PROSITE profilePS5129415.784262325IPR017930Myb domain
TIGRFAMsTIGR015572.6E-11265323IPR006447Myb domain, plants
SMARTSM007174.7E-6266323IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-6267318IPR009057Homeodomain-like
PfamPF002494.5E-8267319IPR001005SANT/Myb domain
CDDcd001673.14E-7269321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MDEDIEVVFH HGGKLVNDGK LKYEGGETSR FMFDPDVWSY FVVVSVVKSL GYHGLKDMWY  60
FVGGASVLDD KLEPLCDDTG DMHMVNLARL NGEVHVFFIH PVSEPDVIHM LEYVGNDEGQ  120
VEERGDVDCE EVEVDAVMEE XVVRVEEVGG VLEEMGNVDG EEQEMGEQVL VEAVMEEEVV  180
RVEEVCGVLE EIGEQVEVEA VMEEEVDGVE EDQNGFNRSQ DDPSVGSGVS LSSGVHSAPH  240
IQLNDQFSCG SDYALKVRKP YTITKQRERW TDEEHKKFLE ALKLHGRAWR RIEVLRYFIL  300
TTEHVGTKTA VQIRSHAQKF FSKVLRDPTG NVTNRAESIE IPPPRPKRKP MHPYPRKLVE  360
TPNKETSIPE QLMKSGSLKS SDFDQENQSP KSVLSGAGSD ILSSSDSDTP NESLSPVSSI  420
SDIHTTSEEA GINADSSHDE KSLMKLKLPT KESVFIKEES SGQTLKLFGI TLFVTDTCKP  480
SSPRTEACKP IPLNICKGDG RLELIGHITP SETSAISLLK MREGPETCDG KGFVPYRRCM  540
AGRENQSSSV TNDNREEQCI HLSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g11370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437372.10.0PREDICTED: protein REVEILLE 2-like
TrEMBLA0A0S3S5M10.0A0A0S3S5M1_PHAAN; Uncharacterized protein
STRINGXP_007146984.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-51MYB_related family protein