PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g10230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 26156.5 Da PI: 8.6664 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++++G g+W++ ++ g+ R++k+c++rw +yl Vang03g10230.1 23 KGPWTAEEDHILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYL 70 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.8e-17 | 76 | 121 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia ++ gRt++++k++w+++l Vang03g10230.1 76 RGKFSKEEEDTILKLHEILGNR-WSAIATSLP-GRTDNEIKNFWHTHL 121 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 14 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.185 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.2E-31 | 19 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 23 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.76E-10 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 26.283 | 71 | 125 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-26 | 74 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-16 | 76 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.67E-12 | 78 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
LCCAVKQAVT MKTPCCERMG MKKGPWTAEE DHILVSHIQR YGHGNWRALP KQAGLLRCGK 60 SCRLRWINYL RPDIKRGKFS KEEEDTILKL HEILGNRWSA IATSLPGRTD NEIKNFWHTH 120 LKKRIQKSGV HINGNASSHI LQEAQANSSS SSGAVSSAYG NVMLDNYGLP SRKNPINPPT 180 VGTGFYGAVS SDTFGETEDS HDSCQLSEEM EFWYNIFIKS GQTSRDNENL GHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 21 | 125 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g10230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491522.1 | 1e-151 | transcription factor MYB4 | ||||
Refseq | XP_014491523.1 | 1e-151 | transcription factor MYB4 | ||||
Refseq | XP_022633556.1 | 1e-151 | transcription factor MYB4 | ||||
Refseq | XP_022633557.1 | 1e-151 | transcription factor MYB4 | ||||
Refseq | XP_022633558.1 | 1e-151 | transcription factor MYB4 | ||||
TrEMBL | A0A0S3S542 | 1e-167 | A0A0S3S542_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147213.1 | 1e-142 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 9e-69 | myb domain protein 15 |