PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g09520.1
Common NameLR48_Vigan09g161800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 338aa    MW: 37915.2 Da    PI: 4.7917
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g09520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.38.3e-151141552159
                     -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      r+YYrCt++   gC ++k+v+rs+edp+++e+tY+g+H+++
  Vang03g09520.1 114 KRGYYRCTHRnvqGCLATKQVQRSDEDPTTIEVTYRGRHTCT 155
                     69*******98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.8E-13106156IPR003657WRKY domain
PfamPF031061.1E-13113154IPR003657WRKY domain
SuperFamilySSF1182906.93E-13113156IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-14113156IPR003657WRKY domain
PROSITE profilePS5081113.035115152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
LFLLVDLHQM EQSPKRKHSS LIHELIQGKE LAKQLGNLLV SSSPSSHEAN ELLVDKILSS  60
YEKALTMLNW GSIVGEAKTT SATMMDSHCS FTNGGSPKSE VVDRELDHKA VLKKRGYYRC  120
THRNVQGCLA TKQVQRSDED PTTIEVTYRG RHTCTQAKYL NKAFPSNIKM GLGENQFHND  180
ETNQPIKEKI QETPVGIFAF ETEHRVKTEE LEIKEDTFPW FSFPSQSNGS ENEDILPEST  240
FENHFTESFS PAFISPATSE SNPFCLSACY LNSTELLCQQ IQTSESDITE TFSAPTSVTN  300
SPILDLDIFL HKGDFDTDFP FNNPDFFSSF ELPCTST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g09520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436943.10.0PREDICTED: probable WRKY transcription factor 30
TrEMBLA0A0L9VE820.0A0A0L9VE82_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S4V20.0A0A0S3S4V2_PHAAN; Uncharacterized protein
STRINGXP_007147293.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-23WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]