PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g09350.1

Common Name

LR48_Vigan09g164900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 254aa MW: 27658 Da PI: 8.7446

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g09350.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	20	79	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk+ Vang03g09350.1 20 PQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKA 79 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	15	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	22	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.956	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEEIGPNSCA RPSSEKKAKP QEQLNCPRCS STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKKAT LSKVPDLNPP VSAISSQNPK MQGVHDLNLA FPAAIDKYHG 120 MSPYAEMPKL EIGGDNTSHH HSPSSAPTSL SPTYGMLPRG LNPYAPNSFM PNSDSLYTPI 180 YPMQEIKPNL SFSVDGFGNR AHGVQENGGG GRLLFPFGDI KHLSAGVEVE HNKEQGNNPT 240 GYWTGIIGDG SSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g09350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017435084.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
Refseq	XP_017435085.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
Refseq	XP_017435087.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
Refseq	XP_017435088.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
Swissprot	Q43385	2e-56	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A0L9VD64	0.0	A0A0L9VD64_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3S4T1	0.0	A0A0S3S4T1_PHAAN; Uncharacterized protein
STRING	XP_007147331.1	1e-161	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-62	Dof family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]