PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g09320.1 | ||||||||
Common Name | LR48_Vigan09g164700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 228aa MW: 25759.9 Da PI: 7.7811 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.6e-17 | 13 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eEd+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l Vang03g09320.1 13 RGNITPEEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 58 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-7 | 1 | 19 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-19 | 2 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.357 | 8 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-17 | 12 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 13 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.53E-13 | 17 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 20 | 58 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
LRWMNYLRPD IKRGNITPEE DDLIIRMHSL LGNRWSLIAG RLPGRTDNEI KNYWNTHLSK 60 KLRNQGTDPK THHKLTVPPE KKKGKKKNKQ KHENKKGSSE KTLVYLPKAV RVKAVSCVPR 120 TESTFTLDSN SGSASTSQEK VQSPEEVARE VNMVWGVGNE GDHGGVGIFF GEDHDLVNTS 180 SYVECHSDDV HTDHGTLQKL YEEYLQLLKD EEKPADELDS FAQSLLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-16 | 2 | 62 | 48 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g09320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435245.1 | 1e-167 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | A0A0L9VDB4 | 1e-166 | A0A0L9VDB4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S4R3 | 1e-166 | A0A0S3S4R3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147330.1 | 1e-142 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 7e-39 | myb domain protein 5 |
Publications ? help Back to Top | |||
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