PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 164aa MW: 18572.2 Da PI: 5.0717

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g09300.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.5	1.3e-39	16	114	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++lrr+C ++C lapyfp ++ ++fa+vh++FGa+nv+k++++++e +r da++s+vyeA ar+rdPvyG++gvi +lq+ +e+lka+l+ Vang03g09300.1 16 PCAACRMLRRRCDSKCELAPYFPTDEVENFAVVHRVFGARNVIKMIQTVEEAKRGDAVKSMVYEATARLRDPVYGSAGVIYELQKMIEELKAQLD 110 7********************************************************************************************99 PP DUF260 96 llke 99 ++++ Vang03g09300.1 111 SIRT 114 8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.934	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-39	16	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MAFHADEAKT SMQHQPCAAC RMLRRRCDSK CELAPYFPTD EVENFAVVHR VFGARNVIKM 60 IQTVEEAKRG DAVKSMVYEA TARLRDPVYG SAGVIYELQK MIEELKAQLD SIRTRMSEMR 120 EEKEQLLSIG NNYDPMFDSA MTSDPFDFPV EGGWLYSNIS TPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-32	16	116	11	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-32	16	116	11	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g09300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-172	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017434724.1	1e-121	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-42	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A0L9VDK1	1e-120	A0A0L9VDK1_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3S4S8	1e-120	A0A0S3S4S8_PHAAN; Uncharacterized protein
STRING	XP_007147329.1	1e-97	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14068	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-45	LOB domain-containing protein 1

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]