PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26659.8 Da PI: 8.2941

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g09030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.4e-18	23	75	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++ q++ Le++Fe ++ + +++ e A++lgL+ rqV +WFqN+Ra++k Vang03g09030.1 23 KKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWK 75 457*************************************************9 PP
2	HD-ZIP_I/II	114.7	5.8e-37	22	113	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+ qvk+LE++Fe++++Lep +K e+areLglqprqva+WFqn+RAR+k+kql +dy++L+++y++l ++ ++L+ke +++ ++l++ Vang03g09030.1 22 NKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQLQRDYTTLRANYKTLDSRFDALNKEYQSMLTQLQD 113 69***********************************************************************************9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-18	6	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.38E-17	7	78	IPR009057	Homeodomain-like
SMART	SM00389	9.8E-16	15	81	IPR001356	Homeobox domain
CDD	cd00086	2.54E-13	16	78	No hit	No description
PROSITE profile	PS50071	16.746	17	77	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-15	23	75	IPR001356	Homeobox domain
PRINTS	PR00031	1.3E-5	48	57	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	52	75	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	57	73	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.0E-11	77	119	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSDISEYSHS SNAGTRKKRS INKKRFSDGQ VKSLESMFET DSRLEPAKKL EVARELGLQP 60 RQVAIWFQNK RARWKLKQLQ RDYTTLRANY KTLDSRFDAL NKEYQSMLTQ LQDLKNRLQK 120 PLEQTESCST RYKAANSMES EAGNGETVKR EQEIKRPCWT AGRSEGIVRS VISDCDSSIK 180 AKQYFGVEDE ASLLNFVENT DGSLTTPQHW GLLESDDIMG CDYQWWDFWS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g09030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017435922.1	1e-172	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A0L9VD68	1e-171	A0A0L9VD68_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3S4P9	1e-170	A0A0S3S4P9_PHAAN; Uncharacterized protein
STRING	XP_007147343.1	1e-137	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	1e-50	homeobox 12

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]